BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909871
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1308 0.0
> AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45296-47019 REVERSE LENGTH=1322
Length=1322
Score = 1308 bits (708), Expect = 0.0
Identities = 843/904 (93%), Gaps = 26/904 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGCCTCTTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCATCTCACAATGCC 60
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 231 ATGGCGGCCTCCTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCGTCTCACAATGCA 290
Query 61 ATTCCCAAATACAAAACCCTAA--TC-TCTTCTTCTTACGCTTACTTAGAAtctctgaaa 117
|||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 291 ATTCCCAAATACAAAACCCTAATCTCTTCTTCTTCTTACTCTTACTTAGAATCTCTGAAA 350
Query 118 cctcaattctcttcttccaattcttttcacctctcttctctttctcGTCCCTTTGTAGCT 177
| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 351 CTTCAATTCTCTTCTTCCAATTCTTTTCATCACTCTTCTCTTTCTCGTCCCTTTGTAGCT 410
Query 178 C-ACCAACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGATgaagaagaaga 236
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 411 CAACC-ACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGAT---GAAG-A-A 464
Query 237 agaagaagttaaaggagaaggagaagtgaaaactggagaaggagaaaCCAATGGAGATAG 296
| |||||| | || | || ||| ||| ||||||| |||| ||||| ||||||
Sbjct 465 A-AAGAAG----A--AG-A--AGTAGT-TAAA--GGAGAAGCAGAACCCAATAAAGATAG 511
Query 297 TGTCGTCTCGGAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAA 356
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TGTCGTCTCCAAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAA 571
Query 357 TATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGT 631
Query 417 AATCTCTGTTGAGGT---ATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGATA 473
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 632 AATCTCTGTAGAGGTGGTATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGGTA 691
Query 474 CGTCACAATGGGTTCTATAAACTCTGCCAAAATCGCAATTGCTTCGCTTGATGGAACAGA 533
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 692 CGTGACAATGGGTTCTATAAACTCTGCCAAAATCGCCATTGCTTCTCTTGATGGAACAGA 751
Query 534 AGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCCGTTGACATGAATCCAGGAGCCAGAAG 593
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 752 AGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACAAGAAG 811
Query 594 AAACCCTGAAGTCTTGAATTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAATACAA 653
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 812 AAACCCTGAAGTCTTGAACTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAACACAA 871
Query 654 GGTTTATGTCGGAAACCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAGACCACTTCAG 713
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 872 GGTCTATGTCGGAAATCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAAACCACTTTAG 931
Query 714 CAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAAAAACAG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 932 CAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAGAAACAG 991
Query 774 AGTCTTTGCCTTTCTTTCTTTTACAAACAGTGAAGAACGTGATGCGGCTTTATCATTGAA 833
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 992 AGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTATCATTCAA 1051
Query 834 TGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATAGAGAAGAGTGAGGC 893
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1052 TGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATCGAGAAGAGTGAGTC 1111
Query 894 GTAA 897
||||
Sbjct 1112 GTAA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5