BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909874
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01050.1 | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr... 1081 0.0
AT4G01480.1 | Symbols: AtPPa5, PPa5 | pyrophosphorylase 5 | chr... 680 0.0
> AT1G01050.1 | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153
REVERSE LENGTH=976
Length=976
Score = 1081 bits (585), Expect = 0.0
Identities = 621/639 (97%), Gaps = 0/639 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGAAGTAACTGTAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAG 60
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAG 185
Query 61 AGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCACATCCCTGGCATGATCTTGAG 120
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 186 AGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTCATCCATGGCATGATCTTGAG 245
Query 121 ATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGAGATCACTAAAGGAAGCAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGAGATCACTAAAGGAAGCAAG 305
Query 181 GTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGGTTGATCGTATTCTGTACTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 306 GTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGGTTGATCGTATTCTCTACTCA 365
Query 241 TCAGTTGTGTACCCTCACAACTACGGTTTTGTTCCTCGTACATTGTGTGAAGACAATGAC 300
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 366 TCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGAC 425
Query 301 CCCATTGATGTATTAGTCATCATGCAGGAACCTGTGCTTCCTGGTTGTTTTCTGCGTGCC 360
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 426 CCCATTGATGTCTTAGTCATCATGCAGGAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCC 485
Query 361 AGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCA 545
Query 421 GTCTGTGTTGATGATCCTGAATATAAGCATTACACTGACATCAAAGAACTTCCTCCTCAC 480
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 546 GTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCAC 605
Query 481 CGTCTCTCTGAAATCCGCCGTTTCTTTGAAGACTACAAGAAAAACGAGAACAAGGAAGTT 540
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 606 CGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTACAAGAAAAACGAGAACAAGGAAGTT 665
Query 541 GCAGTGAATGATTTTCTGCCATCTGAGTCTGCTGTTGAAGCTATCCAGTACTCAATGGAC 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 666 GCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATGGAC 725
Query 601 CTCTATGCTGAATACATTCTTCATACCCTGAGGCGTTGA 639
|||||||||||||||||||| || |||||||||||||||
Sbjct 726 CTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGA 764
> AT4G01480.1 | Symbols: AtPPa5, PPa5 | pyrophosphorylase 5 | chr4:626118-628055
FORWARD LENGTH=1033
Length=1033
Score = 680 bits (368), Expect = 0.0
Identities = 521/595 (88%), Gaps = 10/595 (2%)
Strand=Plus/Plus
Query 44 CTCCTCGTCTT-AACGAGAGGATTCTCTCATCCTTGTC-AAGAAGATCCGTAGCTGCACA 101
|||| ||| || |||||||||||||||||||| ||||| ||| ||||| || ||||||||
Sbjct 141 CTCCACGT-TTAAACGAGAGGATTCTCTCATCTTTGTCTAAG-AGATCGGTTGCTGCACA 198
Query 102 TCCCTGGCATGATCTTGAGATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGA 161
||| |||||||||||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct 199 TCCATGGCATGATCTTGAAATCGGACCTGGAGCTCCAGTGATTTTCAATGTGGTTATTGA 258
Query 162 GATCACTAAA-GGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGG 220
|||| | ||| || ||||| |||||||| || ||||||||||| ||||| ||||||||||
Sbjct 259 GATCTC-AAAGGGGAGCAAAGTCAAATATGAACTTGACAAAAAAACAGGTCTCATCAAGG 317
Query 221 TTGATCGTATTCTGTACTCATCAGTTGTGTACCCTCACAACTACGGTTTTGTTCCTCGTA 280
||||| | ||||| || || || |||||||| |||||||||||||| ||||| || || |
Sbjct 318 TTGATAGGATTCTTTATTCTTCGGTTGTGTATCCTCACAACTACGGGTTTGTCCCACGCA 377
Query 281 CATTGTGTGAAGACAATGACCCCATTGATGTATTAGTCATCATGCAGGAACCTGTGCTTC 340
|| | ||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct 378 CACTATGTGAAGACAATGACCCTATAGATGTTTTAGTTATCATGCAGGAGCCTGTGCTTC 437
Query 341 CTGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAA 400
| ||||||||||| || ||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 438 CGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGGGTGAAA 497
Query 401 AAGATGACAAGATCATTGCGGTCTGTGTTGATGATCCTGAATATAAGCAT-TACACTGAC 459
||||||||||||||||||| || ||||||||||||||||| |||||||| | |||| ||
Sbjct 498 AAGATGACAAGATCATTGCAGTTTGTGTTGATGATCCTGAGTATAAGCACAT-CACTAAC 556
Query 460 ATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAATCCGCCGTTTCTTTGAAGACTACAAG 519
||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||
Sbjct 557 ATCAATGAACTTCCTCCTCATCGTCTTTCTGAAATCCGTCGATTCTTTGAAGACTACAAG 616
Query 520 AAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTC-TGCTGTTGA 578
|| || |||||||||||||||||||||||||||||||| | | ||| ||| |||| ||||
Sbjct 617 AAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTG-GTCCTGCTATTGA 675
Query 579 AGCTATCCAGTACTCAATGGACCTCTATGCTGAATACATTCTTCATACCCTGAGG 633
||| || |||||||||||||| || || ||||| ||||||||||| |||||||||
Sbjct 676 AGCCATTCAGTACTCAATGGATCTTTACGCTGAGTACATTCTTCACACCCTGAGG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5