BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909881
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04430.1 | Symbols: anac049, NAC049 | NAC domain containing ... 933 0.0
> AT3G04430.1 | Symbols: anac049, NAC049 | NAC domain containing
protein 49 | chr3:1175506-1176986 REVERSE LENGTH=597
Length=597
Score = 933 bits (505), Expect = 0.0
Identities = 563/591 (95%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 1 ATGTATAGATGCACATTTAACCCACCTGAGGAAGAACTCATTAACTATTACTTGAATAAC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTATAGATGCACATTTAACCCACCTGAAGAAGAACTCATTAACTATTACTTGAATAAC 60
Query 61 AAGATCACAGAGAATGATGATCTAGT-GGGAAGGCAAATAACCGAAGTCAATATA-TGTC 118
|||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| || |
Sbjct 61 AAGATCACAGAGAATGATGATCTAGTGGGGAA-GCAAATCGCCGAGGTCAATATATTG-C 118
Query 119 ACCATGAACCTGCAGATTTACCTGGGCTGGCGAAGATAGAATCGAGTCACACTTGGTACT 178
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 ACCATGAACCTGCAGATTTACCTGGGCTGGCGAAGATAGAATCGAGTCATACTTGGTACT 178
Query 179 TCATATCGCCGGTGGAGAAGTTTGGAAAGCTGAACCGAACGAAGAGGGCGTCGAGGACAG 238
||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||
Sbjct 179 TCATATCGCCGGTGGAGAAGTTTGGGAAGCTCAACCGAACGAAGAGGGTGTCGAGGTCAG 238
Query 239 GGCACTGGAAGATAACCGGGAATAGTCGTACCATTAAGGACATTGATGGTAATCCTATCG 298
||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 239 GGCACTGGAAGATAACCGGAAATAGTCGTACCATTAAGGACGTTGATGGTAACCCTATCG 298
Query 299 GTTTAAAGAAGTTTCTTGTCTTCCAAGAAAACAAAAGATCTTCTTCTTCCTCGTCATCCA 358
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 299 GTTTAAAGAAATTTCTTGTTTTCCAAGAAAACAAAAGATCTTCTTCTTCCTCGTTATCCA 358
Query 359 CCACTACCACCCAACAACAAAAGACCAATTGGATTATCCATGAATTTCATTCCTTTCTCC 418
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCACTACCACCCAACAACAGAAGACCAATTGGATTATCCATGAATTTCATTCCTTTCTCC 418
Query 419 ACCATCCCAACAAGATGCTGACGGAGAACAAGAACGAAGATTATGGCGGAGATTATTGTA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCCATCCCAACAAGATGCTGACGGAGAACAAGAACGAAGATTATGGCGGAGATTATTGTA 478
Query 479 ATGGCTTAGACGAGCTTCTCCCTTCAATGGAACAAGGTGAATCCAGCGGCCTCCTTCTCG 538
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 479 ATGGCTTAGACGAGCTTCTCCAATCACTGGAACAAGGTGAATCCAGCGGCCTCCTTTTCG 538
Query 539 GAGAAAATGGACACGCGTATGAACAAGACACCACAGAAAACTCCAATGTGA 589
|||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 539 GAGAAAATGGACACGCGTGTGAACAAGATACCGCAGAAAACTCCAATGTGA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5