BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909883
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02230.1 | Symbols: ANAC004, NAC004 | NAC domain containing ... 1404 0.0
AT1G02250.1 | Symbols: anac005, NAC005 | NAC domain containing ... 656 0.0
AT1G02220.1 | Symbols: ANAC003, NAC003 | NAC domain containing ... 268 6e-71
AT3G04410.1 | Symbols: | NAC (No Apical Meristem) domain trans... 156 5e-37
> AT1G02230.1 | Symbols: ANAC004, NAC004 | NAC domain containing
protein 4 | chr1:435174-436776 REVERSE LENGTH=1081
Length=1081
Score = 1404 bits (760), Expect = 0.0
Identities = 985/1092 (90%), Gaps = 21/1092 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAAGAGATCGTCGACCATTAC 60
||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 2 ATGATGAATCCGGTGGGTTTCAGATTCCGTCCAAACGACGAGGAGATCGTCGACCATTAC 61
Query 61 CTCCGGCCAAAAAATCTCGATAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGTC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 CTCCGGCCAAAAAATCTCGATAGTGACACTAGCCATGTCGATGAAGTCATTAGCACAGTC 121
Query 121 GATATCTGTGA-CTCCGATCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGTGA 179
||||||||| | || ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 GATATCTGT-AGCTTCGAGCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGAGA 180
Query 180 TGGGGTTTGGTATTTCTTTAGTCTTAAAGAGATGAAGTATAACAGAGGTGATCAACAGAG 239
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 181 TGGGGTTTGGTATTTCTTTAGTGTTAAGGAGATGAAGTATAACAGAGGTGATCAACAGAG 240
Query 240 AAGAAGAACAAATTCTGGCTTTTGGAAGAAAACTGGAAAAACCTTGACTATCATGCGCAA 299
|||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 241 AAGAAGAACAAACTCTGGGTTTTGGAAGAAAACTGGAAAAACAATGACTGTCATGCGCAA 300
Query 300 AAGAGGTAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCGAGATAG 359
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 301 AAGAGGAAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTTTTTAAGAATCGAGATGG 360
Query 360 TTCCAAGACCGATTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAATCAGGT 419
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TTCAAAGACCGACTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAATCAGAT 420
Query 420 GATGACGTATACAATCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATTTCTTCTTC 479
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GATGACGTATACAGTCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATCTCTTCTTC 480
Query 480 TTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTCTTGTGAACAATTCTGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 TTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTCTTGTGAACAGTTCTGG 540
Query 540 AGGATCTGAGGGATCGTCGTAT-A--GCCAAGAATTACAGAATCCAAGTCAGTTTAGTGG 596
|||||||||||| ||||||| | | ||||||||||||||||| ||||||||| | |||
Sbjct 541 AGGATCTGAGGGTTCGTCGTTTCACAGCCAAGAATTACAGAATTCAAGTCAGTCTGGTGT 600
Query 597 CTTTTCTGATGTGCACCAAGAAGCTCAGCTTGATGATGCAACTACATCGACTGAGGA--A 654
|||| || ||||||| |||| |||| | ||||||||||||||| ||| |||||| |
Sbjct 601 CTTTGCTAATGTGCAGGGAGAATCTCAAATCGATGATGCAACTACACCGATTGAGGAGGA 660
Query 655 -TGGAAAACCTGGTTGAATGATGATGGTGATGAGCAGATGAATTAT-ATTGTGAACATGC 712
|||||||| ||||||||| |||||||||||||||||| |||| || || || | |||
Sbjct 661 ATGGAAAACATGGTTGAATAATGATGGTGATGAGCAGAGGAAT-ATCAT-GTTTA--TGC 716
Query 713 AAGATGATCGCAACGACCACAGACCTCAAAAGCCATTGACTGGTGTCTTCATTGATTATA 772
||||| |||||| ||| ||| ||||| |||| | || ||||||||||||| |||| |||
Sbjct 717 AAGATCATCGCAGCGATTACACACCTCTAAAGTCGTTAACTGGTGTCTTCAGTGATGATA 776
Query 773 GCAGTGATGATAATGATTCTGATTTGCTATCTCC-AAATACAAATTTTATTGAAACTTGG 831
|||||||||||||||||||||||||| ||||||| ||| ||||||| ||||| ||||| |
Sbjct 777 GCAGTGATGATAATGATTCTGATTTGATATCTCCTAAA-ACAAATTCTATTGGAACTTCG 835
Query 832 AGCTCTTGTGATAGTTTTGCTAGCTCAAATCATCGGATAGACCAAATCAAAACTCAACAA 891
||| |||||| ||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 836 AGCACTTGTGCTAGTTTTGCTAGCTCAAATCATCAGATAGACCAAA-C-----TCAACAT 889
Query 892 TCTCCTGACTCAACAATCAAGTTAGTGACATTAACTCAAGAGGTGAGCCAAGCTCTGGGT 951
||||||||||||||| || || ||||| |||||||||||||||||||||||| || ||||
Sbjct 890 TCTCCTGACTCAACAGTCCAGCTAGTGTCATTAACTCAAGAGGTGAGCCAAGGTCCGGGT 949
Query 952 CAAGGGATTGAGATTGGAGAGCATAAATTGGGTCAAGAGACGGTCAGGAAGAAAAGAGCA 1011
|||| || || |||| ||||||||||||||||| ||||| | |||| ||||||||||||
Sbjct 950 CAAGTGACTGTGATTCGAGAGCATAAATTGGGTGAAGAGTCTGTCAAGAAGAAAAGAGCT 1009
Query 1012 AGTTTCGTTTACAGGATGATACAAAGATTGGTCAAGAAAATGCAGCTATGTTCTTCTATC 1071
||||||||||||||||||||||| ||||| ||||||||||| || | ||||| |||||||
Sbjct 1010 AGTTTCGTTTACAGGATGATACACAGATTAGTCAAGAAAATTCACCAATGTTATTCTATC 1069
Query 1072 TCAAGAACATGA 1083
||||||||||||
Sbjct 1070 TCAAGAACATGA 1081
> AT1G02250.1 | Symbols: anac005, NAC005 | NAC domain containing
protein 5 | chr1:437951-439559 REVERSE LENGTH=1089
Length=1089
Score = 656 bits (355), Expect = 0.0
Identities = 874/1112 (79%), Gaps = 85/1112 (8%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAAGAGATCGTCGACCA-TTA 59
|||| ||||||||||||||| |||||||||||||| |||| ||||||||||| || |||
Sbjct 1 ATGGCGAATCCGGTGGGTTTTAGATTCCGTCCGACTGACGGGGAGATCGTCGA-CATTTA 59
Query 60 CCTCCGGCCAAAAAATCTCGATAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
|||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 60 CCTCCGACCGAAAAATCTCGAAAGTAACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
Query 120 CGATATCTGTGA-CTCCGATCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGTG 178
||||| ||| | || ||| |||||||| ||||||||| | || | ||| ||| | || |
Sbjct 120 TGATATTTGT-AGCTTCGACCCTTGGGACTTACCTTCCCATTCTAGGATGAAAACAAGAG 178
Query 179 ATGGGGTTTGGTATTTCTTTAGTCTTAAAGAGATGAAGTATAACAGAGGTGATCAACAGA 238
|| ||||||||||||||| | | ||| |||| || ||| | |||||||| |||||
Sbjct 179 ATCAGGTTTGGTATTTCTTCGGCCGTAAGGAGAACAAATATGGTAAAGGTGATCGACAGA 238
Query 239 GAAGAAGAACAAATTCTGGCTTTTGGAAGAAAACTGGAAAAACC-TTGACTATCATGCGC 297
||||| ||| || ||||| ||||||||||||||||| ||| | || ||| ||||||
Sbjct 239 TAAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGCGTTACCATGGA-TATAATGCGC 297
Query 298 AAAAGAGGTA-ATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCGA-G 355
|||| || | ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 298 AAAA-CGGGAGATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATC-ACG 355
Query 356 ATAGTTCCAAGACCGATTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAATC 415
| |||||||| ||||||||| |||||| |||||||||||||||| || || ||||||||
Sbjct 356 GTGGTTCCAAGTCCGATTGGGCTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAATC 415
Query 416 AGGTGATGACGTATACAATCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATTTCTT 475
|| | ||||| || ||| ||||||||||| |||||||||||||| || ||||| || ||
Sbjct 416 AGATAATGACATACACACTCTGCAAAGTTAAGTTTAAGGGTGAA-AGG-AGAGAATT-TT 472
Query 476 CTTCTT-CTACTGGTAGTGAAATTGAA-CAGATTCACTCTTTAATCCCTCTTGTGAACAA 533
| || |||||||||||| |||| || || | ||||||||||||||||| | |||||
Sbjct 473 CAG-TTGCTACTGGTAGTGGAATT-AAGCATACTCACTCTTTAATCCCTCCTACCAACAA 530
Query 534 TTCTGGAG----GA-TCT-GAG---G-G--ATCGTCGTAT-A--GCCAAGAATTACAGAA 578
|||||||| || | | ||| | | ||||| || | | ||||||||| ||||||
Sbjct 531 TTCTGGAGTTTTGAGTGTAGAGACAGAGGGATCGTTGTTTCACAGCCAAGAATCACAGAA 590
Query 579 TCCAAGTCAGTTTAGTGGCTTTTCT-GATGTGCAC-CAAGAAGCTCAGCTTGA-TGATGC 635
||||||||||||| ||||||| || |||||| | || | | | || || | |||
Sbjct 591 TCCAAGTCAGTTTTCTGGCTTT-CTTGATGTGGATGCACTA-GAT-AGG--GACTTCTGC 645
Query 636 AACTACATCGACTGAGGAATGGAAAACCTGGTTGAATGATGATGGTGATGAGCAGATGAA 695
|| || | || ||| || | ||| || || |||||||| | ||||||||| | |
Sbjct 646 AA-TATTTTGAGTGATGATTTCAAAGGCTTCTTTAATGATGACG---ATGAGCAGA-GTA 700
Query 696 TTATATTGTGAAC-ATGCAAGATGATCGCAACGACCACAGACCTCAAAAGCCATTGACTG 754
| ||||| | |||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 701 --AGATTGTTT-CTATGCAAGATGATCGCAACAACCACACACCTCAAAAGCCATTGACCG 757
Query 755 GTGTCTTCATTGATTATAGCAGTGATGATAATGATTCTGATTTGCTATCTCCAA-ATACA 813
||||||||| |||| |||||| |||| || |||||||||| | | ||| ||| | ||
Sbjct 758 GTGTCTTCAGTGATCATAGCACCGATGGTAGTGATTCTGATCCGATTTCTGCAACA-ACT 816
Query 814 AATTTT-ATTGAAACTTGGAGCTCTTGTGATAGTTTTGCTAGCTCAAATCATCGGATAGA 872
| ||| ||| |||||| ||| ||||| |||||||| ||||||||||| || |||
Sbjct 817 A-TTTCCATTCAAACTTTAAGCACTTGTCCTAGTTTTGGTAGCTCAAATCCTCT-ATA-- 872
Query 873 CCAAATCAAA-ACT--CAACAATCTCCTGACTCAACAATCAAGTTAGTGACATTAACTCA 929
|||||||| ||| || |||||||| |||||| ||||||||||| ||||| ||||
Sbjct 873 CCAAATCACTGACTTGCAGGAATCTCCTAACTCAA---TCAAGTTAGTGTCATTAGCTCA 929
Query 930 AGAGGTGAGCCAA-----G----C---TCTGG-----G-T-CA-A-GGGATTGAGATTGG 968
|||||||||| || | | | | | | | || | |||| |||||||||
Sbjct 930 AGAGGTGAGCAAAACACCGGGAACCGGTATTGATAATGATGCACAAGGGACTGAGATTGG 989
Query 969 AGAGCATAAATTGGGTCAAGAGACGGTCAGGAAGAAAAGAGCAAGTTTCGTTT-ACAGGA 1027
|||||||||||||||||||||||| ||| ||| |||||||| ||||| ||| ||||||
Sbjct 990 TGAGCATAAATTGGGTCAAGAGACGATCAAGAACAAAAGAGCTGGTTTC-TTTCACAGGA 1048
Query 1028 TGATACAAAGATTGGTCAAGAAAATGCAGCTA 1059
||||||||| ||| ||||||||||| || |||
Sbjct 1049 TGATACAAAAATTCGTCAAGAAAATTCACCTA 1080
> AT1G02220.1 | Symbols: ANAC003, NAC003 | NAC domain containing
protein 3 | chr1:428814-430647 REVERSE LENGTH=1353
Length=1353
Score = 268 bits (145), Expect = 6e-71
Identities = 264/318 (83%), Gaps = 22/318 (7%)
Strand=Plus/Plus
Query 644 CGACTGAGGAATGGAAAACCTGGTTGAATG--A-TGATGGTGATGAGCAGATGAATTAT- 699
||| |||||||||| |||| |||||||||| | ||||| || | || ||| | | |||
Sbjct 772 CGATTGAGGAATGGGAAACATGGTTGAATGATATTGATGATGCTAAGGAGAAG-AGTATC 830
Query 700 ATTGTGAACATGCAAGATGATCGCAA-CGACCACAGACCTCAAAAGC-CATTGACTGGTG 757
| ||| ||||| ||| |||| || || ||||||||| ||| | |||| |||||||
Sbjct 831 A-TGT--TTATGCATGATAATCG-AAGTGATTACAGACCTCCAAA-CTCATTAACTGGTG 885
Query 758 TCTTCA-T--TGAT-TATAGCAGTGATGATAATGATTCTGATTTGCTATCTCCAAATACA 813
|||||| | |||| | ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 886 TCTTCAGTGATGATGT-TAGCAGTGATGATAATGATTCTGATTTGCTAACTCCAAAAACA 944
Query 814 AATTTTATTGAAACTTGGAGCTCTTGTGATAGTTTTGCTAGCTCAAATCATCGGATAGAC 873
|| | |||| |||||| |||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 945 AACTCTATTCAAACTTCGAGCACTTGTGATAGTTTTGGTAGCTCAAATCATCGCATAGAC 1004
Query 874 CAAATCAAA-AC-T-CAACAATCTCCTGAC-TCAACAATCAAGTTAGTGACATTAACTCA 929
|| |||||| || | ||| |||||||| || ||||||||||| |||||| || |||||||
Sbjct 1005 CAGATCAAAGACCTGCAAGAATCTCCT-ACCTCAACAATCAACTTAGTGTCACTAACTCA 1063
Query 930 AGAGGTGAGCCAAGCTCT 947
||||||||||||||||||
Sbjct 1064 AGAGGTGAGCCAAGCTCT 1081
> AT3G04410.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr3:1168837-1169205
FORWARD LENGTH=231
Length=231
Score = 156 bits (84), Expect = 5e-37
Identities = 96/102 (94%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAAGAGATCGTCGACCATTAC 60
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCAAAGAGGAGATCGTCGACCATTAC 60
Query 61 CTCCGGCCAAAAAATCTCGATAGTGACACGAGCCATGTCGAT 102
|||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 61 CTCCGGCCAACAAATTTCGATGGTGACACGAGCCATGTCGAT 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5