BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909901
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02400.1 | Symbols: ATGA2OX4, ATGA2OX6, DTA1, GA2OX6 | gibbe... 1640 0.0
> AT1G02400.1 | Symbols: ATGA2OX4, ATGA2OX6, DTA1, GA2OX6 | gibberellin
2-oxidase 6 | chr1:486801-489577 FORWARD LENGTH=1339
Length=1339
Score = 1640 bits (888), Expect = 0.0
Identities = 957/991 (97%), Gaps = 2/991 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTTGCCATCTTCAACACCGTTACAAATCACCGGAAAGAAGACGAAATCCTTACCG 60
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 164 ATGGTTTTGCCATCTTCAACACCGTTACAAACCACCGGAAAGAAGACGATATCCTCGCCG 223
Query 61 GAATATAGCTTTCCGGTGATCGATTTCTCCTTAAACGATCGGTCAAAACTATCGGAGAAG 120
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GAATATAACTTCCCGGTGATCGATTTCTCCTTAAACGATCGGTCAAAACTATCGGAGAAG 283
Query 121 ATCGTAAAAGCCTGTGAGGTTAATGGGTTTTTCAAGGTGATAAACCACGGAGTTAAACCG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 284 ATCGTAAAAGCCTGTGAGGTTAATGGGTTTTTCAAGGTGATAAACCATGGAGTTAAACCG 343
Query 181 GAGATAATATCGAGATTCGAGCATGAAGGAGAAGACTTCTTTGATAAACCGGAATCGGAT 240
||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 344 GAGATAATAAAGAGATTCGAGCATGAAGGAGAAGAGTTCTTTAATAAACCGGAATCAGAT 403
Query 241 AAGCAACGAGCCGGTCCGGCGAGTCCTTTCGGTTACGGATGCAAGAACATCGGCTTCAAC 300
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 404 AAGCTACGAGCCGGTCCGGCGAGTCCGTTCGGTTACGGATGCAAGAACATCGGGTTCAAC 463
Query 301 GGCGATTTGGGTGAGCTTGAGTATCTTCTTCTCCACGCAAATCCGACAGCTGTCGCTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGCGATTTGGGTGAGCTTGAGTATCTTCTTCTCCACGCAAATCCGACAGCTGTCGCTGAT 523
Query 361 CAATCTGAAACTATATCTCATGATGATCCTTTCAAGTTCAGCTCGGCGACGAATGATTAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAATCTGAAACTATATCTCATGATGATCCTTTCAAGTTCAGCTCGGCGACGAATGATTAC 583
Query 421 ATACGCGCGGTTAAAGATTTGGCATGTGAGATCATTGACCTGACGATCGAGAATTTATGG 480
|||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 584 ATACGCACGGTTAGAGATTTGGCATGTGAGATCATTGATCTGACGATCGAGAATTTATGG 643
Query 481 GGACAGAAGTCTAGTGAAGTCAGTGAGCTGATCAGAGACGTTCGTAGCGATTCGATCCTA 540
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 644 GGACAGAAGTCTAGCGAAGTGAGTGAGCTGATCAGAGACGTTCGTAGCGATTCGATCCTA 703
Query 541 CGGTTGAATCACTATCCACCAGCACCGTACGCGTTAAGAGGCGTTGGTCAAATAGGTTTC 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 704 CGGTTGAATCACTATCCACCAGCACCGTACGCGTTAAGTGGCGTTGGTCAAATAGGTTTC 763
Query 601 GGAGAGCATTCTGACCCTCAGATCTTGACGGTGTTAAGATCCAACGACGTAGATGGACTT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GGAGAACATTCTGACCCTCAGATCTTGACGGTGTTAAGATCCAACGACGTAGATGGACTT 823
Query 661 GAGATTTGCTCACGTGACGGCTTGTGGACCCCAAT-CCAGTCTGACCCTACATGCTTCTT 719
|||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 824 GAGATTTGCTCACGTGACGGCTTGTGGATCCCAATCCCA-TCTGACCCTACATGCTTCTT 882
Query 720 CGTATTGGTCGGTGACTGCCTTCAGGCATTGACGAATGGGAGATTCACTAGCGTGAGGCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CGTATTGGTCGGTGACTGCCTTCAGGCATTGACGAATGGGAGATTCACTAGCGTGAGGCA 942
Query 780 TAGGGTTTTAGCAAACATAGCAAAGAAGCCACGTATGTCGGCAATGTACTTTGCAGCGCC 839
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 943 TAGGGTTTTAGCAAACACAGCAAAGAAGCCACGTATGTCGGCGATGTACTTTGCAGCTCC 1002
Query 840 ACCGTTAGAGGCGAAAATATCACCGTTGCCAAAAATGGTGTCGCCAGAAAATCCAAGACG 899
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1003 ACCGTTAGAGGCGAAAATATCACCGTTGCCAAAAATGGTGTCGCCGGAAAATCCAAGACG 1062
Query 900 GTATAATTCATTCACATGGGGTGACTACAAAAAAGCTACATACTCTCTCCGTTTAGGTGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1063 TTATAATTCATTCACATGGGGTGACTACAAAAAAGCTACATACTCTCTCCGTTTAGATGT 1122
Query 960 CCCTCGTCTTGAGTTCTTCAAGACTTTATAG 990
||||||||| ||||| |||||||||||||||
Sbjct 1123 CCCTCGTCTCGAGTTTTTCAAGACTTTATAG 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5