BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909905
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02430.1 | Symbols: ATARFD1B, ARFD1B | ADP-ribosylation fact... 881 0.0
AT1G02440.1 | Symbols: ATARFD1A, ARFD1A | ADP-ribosylation fact... 854 0.0
> AT1G02430.1 | Symbols: ATARFD1B, ARFD1B | ADP-ribosylation factor
D1B | chr1:495050-496062 REVERSE LENGTH=698
Length=698
Score = 881 bits (477), Expect = 0.0
Identities = 545/577 (94%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 1 ATGGGGACGA-CTCTGGGAAAGCCACTTGCCGGTTTTTTCCACAAAGAAGAACT-GAGGA 58
|||||||| | |||||||||||||| ||||||||||||||||| |||||||| | |||||
Sbjct 1 ATGGGGAC-AGCTCTGGGAAAGCCATTTGCCGGTTTTTTCCACCAAGAAGAA-TCGAGGA 58
Query 59 TAGTGTTCTTCGGTCTCGACGGTACCGGAAAATCATCAATACTGCACAAACTCAAAACCG 118
||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 59 TAGTGTTGTTCGGTCTCGACGCTGCCGGAAAATCATCAATAATGCACAAACTCAAAACCG 118
Query 119 GAGAAACCCTTACCACAACCATGCCTACTGTTGGATTGAATGTGGAAAGTGTAAGATACA 178
||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||
Sbjct 119 GAGAAACCCTTACCACAACCATGCCTACTATTGGAACGGATGTGGAAAGTGTAAAATACA 178
Query 179 AGGATTCAATCTTGA-GCTTTTGGGAAATGGGCGGCCAACAGTGTTACAAGTGGTTTCCA 237
||||||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 AGGATTCAAACTT-ACGCTTTTGGGAAATGGGCGGCCAACAATGTTACAAGTGGTTTCCA 237
Query 238 AT-ATCGAAACATTACTTCCAAGATATAGCGGGGCTTGTGCTTGTAGTCGATAGCACGGA 296
|| | |||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 238 ATGA-CGAAACATGACTTCCAAGAAATAGCGGGGCTTGTGCTTGTAGTCGATAGCACAGA 296
Query 297 CAGAGATCGAATAGAAGAGGCGAAAGATTTTCTTAACGTGGTGATTGATGAGATACAAGG 356
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 297 CAGAGATCGAATAGAAGATGCGAAAGATTTTCTTAATGCGGTGATTGATGAGATACAAGG 356
Query 357 GAGTGTACCGGACAATGTGGCTGTTCTTGTATATGGAAACAATCATGAAGTTCCTGGTGC 416
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 357 GAGTGTACCGGACAATGTGGCTGTTCTTGTATTTGGAAACAAGCATGAAGTTCCTGGTGC 416
Query 417 TATGTCTGCTTCTGAGATCAGTAACAAGCTCGATCTCACTTCTCTTCGTCaaaaaaaCTG 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TATGTCTGCTTCTGAGATCAGTAACAAGCTTGATCTCACTTCTCTTCGTCAAAAAAACTG 476
Query 477 GCAGAGAAACTGGCATGTCCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCAGAGAAACTGGCATGTCCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGG 536
Query 537 ACTCGACTGGCTATTGAACAATGCTGAAAGAATGTAA 573
|||||||||||| ||||| ||||||||||||||||||
Sbjct 537 ACTCGACTGGCTGTTGAAAAATGCTGAAAGAATGTAA 573
> AT1G02440.1 | Symbols: ATARFD1A, ARFD1A | ADP-ribosylation factor
D1A | chr1:496586-497479 REVERSE LENGTH=573
Length=573
Score = 854 bits (462), Expect = 0.0
Identities = 538/575 (94%), Gaps = 4/575 (1%)
Strand=Plus/Plus
Query 1 ATGGGGACGACTCTGGGAAAGCCACTTGCCGGTTTTTTCCACAAAGAAGAA-CTGAGGAT 59
|||||||||||||||||||||||| ||||||||||||| ||| |||||||| | ||||||
Sbjct 1 ATGGGGACGACTCTGGGAAAGCCATTTGCCGGTTTTTTTCACCAAGAAGAAGC-GAGGAT 59
Query 60 AGTGTTCTTCGGTCTCGACGGTACCGGAAAATCATCAATACTGCACAAACTCAAAACCGG 119
||||| || ||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 60 CGTGTTGTTTGGTCTCGGCGGTACCGGAAAATCATCAATAATGCACAAATTCAAAACCGG 119
Query 120 AGAAACCCTTACCACAACCATGCCTACTGTTGGATTGAATGTGGAAAGTGTAAGATACAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 AGAAACCCTTACCACAACCATGCCTACTGTTGGATTGAATGTGGAAAGTGTAAAATACAA 179
Query 180 GGATTCAATCTTGA-GCTTTTGGGAAATGGGCGGCCAACAGTGTTACAAGTGGTTTCCAA 238
|||||||| ||| | ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 180 GGATTCAAACTT-ATGCTTTTGGGAAATGGGCGGCCAACAATGTTACATGTGGTTTCCAT 238
Query 239 TATCGAAACATTACTTCCAAGATATAGCGGGGCTTGTGCTTGTAGTCGATAGCACGGACA 298
||| |||||| | |||||||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 239 TATGGAAACACTGGTTCCAAGAAATAGCGGGGCTTGTGCTTGTAGTCGACAGCACGGGCA 298
Query 299 GAGATCGAATAGAAGAGGCGAAAGATTTTCTTAACGTGGTGATTGATGAGATACAAGGGA 358
|||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 GAGATCAAATAGAAGAGACGAAAGATTTTCTTAACGTGGTGATCGATGAGATACAAGGGA 358
Query 359 GTGTACCGGACAATGTGGCTGTTCTTGTATATGGAAACAATCATGAAGTTCCTGGTGCTA 418
||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 GTGTACCGGACAATGCGCCTGTTCTTGTATATGGAAACAAGCATGAAGTTCCTGGTGCTA 418
Query 419 TGTCTGCTTCTGAGATCAGTAACAAGCTCGATCTCACTTCTCTTCGTCaaaaaaaCTGGC 478
|||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 419 TGTCTGCTTCTGAGATCAGTAACAAGCTAGATCTCACTAGTCTTCGTAAAAAAAACTGGC 478
Query 479 AGAGAAACTGGCATGTCCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGGAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGAGAAACTGGCATGTCCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGGAC 538
Query 539 TCGACTGGCTATTGAACAATGCTGAAAGAATGTAA 573
|||||||||| ||||| ||||||||||||||||||
Sbjct 539 TCGACTGGCTGTTGAAAAATGCTGAAAGAATGTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5