BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909919
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02610.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1077 0.0
> AT1G02610.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:553050-555994 REVERSE LENGTH=937
Length=937
Score = 1077 bits (583), Expect = 0.0
Identities = 639/666 (96%), Gaps = 3/666 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAAGTAGTATTGTTCATAGATGAAACATATTGGAAATCGAGTTTTAATCGCTGT 60
|||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 141 ATGGGAGATGTAGTTTTGTTCATAGATGAAACATATTTGAAATCGAGTTTTAATCGCTGT 200
Query 61 AGAATCTGTCACGAAGAAGAAGCTGAGAGCTACTTTGAAGCTCCTTGTTCTTGTTCAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGAATCTGTCACGAAGAAGAAGCTGAGAGCTACTTTGAAGCTCCTTGTTCTTGTTCAGGA 260
Query 121 ACCATCAAGTTCGCTCACAGAGATTGCATACAACGATGGTGTGATGAGAAAGGAAACACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 ACCATCAAGTTCGCTCACAGAGATTGCATACAACGATGGTGTGATGAGAAAGGAAACACA 320
Query 181 ATTTGTGAAATTTGTCTCCAGGAGTATAAACCTGGATACACCACAACTTCAAAACCATCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATTTGTGAAATTTGTCTCCAGGAGTATAAACCTGGATACACCACAACTTCAAAACCATCT 380
Query 241 CGACTGATTGAAGCAGGAGTCACAATCAGAGATAATTTACACACAGCGAGgagagaaaat 300
||| | |||||| ||| |||||||||||||||||||||||||| | ||| |||||||||
Sbjct 381 CGATTTATTGAAACAGCAGTCACAATCAGAGATAATTTACACATAATGAGAAGAGAAAAT 440
Query 301 gga-g--gaagaagaaatagaagattagtgaatagagaagaatcagattttcaagaatGC 357
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GGAAGAAGAAGAAGAAATAGAAGATTAGTGAATAGAGAAGAATCAGATTTTCAAGAATGC 500
Query 358 AACTCTGGTGTTCATAGAGGCGCCTCTTGTTGTAGATTCTTGGCTCTCATTTTTTCGGTG 417
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 501 AACTCTGGTGTTGATAGAGGCGCCTCTTGTTGTAGATACTTGGCTCTCATTTTTTCGGTT 560
Query 418 GTTTTGTTGATAAAGCATGCATTTGATGCGGTTTATGGAACTGAAGAGTATCCCTATACA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATTTTGTTGATAAAGCATGCATTTGATGCGGTTTATGGAACTGAAGAGTATCCCTATACA 620
Query 478 ATATTCACTGTATTAACATTGAAGGCCATAGGCATACTATTGCCAATGCTCGTTATCATT 537
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 621 ATATTCACGGTCTTAACATTGAAGGCTATAGGCATACTATTACCAATGCTCGTTATCATT 680
Query 538 CGAACCATCGCAGCTATTCAGAGGAGTCTCCGATATCAAATTCTCGAATCTGAAGAAGAT 597
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 681 CGAACCATCACAGCTATTCAAAGGAGTCTCCGATATCAAATTCTCGAATCAGAAGAAGAT 740
Query 598 ACATTGAGCTCTGAAGAAGAAGATCATGGTTTGGAGGAGGAAGAGCAACAACAACATTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 741 ACATTGAGCTCTGAAGAAGAAGATCATGGTTTGGAGGAGGAAGAGCAACAACAACATATA 800
Query 658 GCTTGA 663
||||||
Sbjct 801 GCTTGA 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5