BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909946
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02850.4 | Symbols: BGLU11 | beta glucosidase 11 | chr1:6305... 913 0.0
AT1G60270.1 | Symbols: BGLU6 | beta glucosidase 6 | chr1:222216... 167 3e-40
> AT1G02850.4 | Symbols: BGLU11 | beta glucosidase 11 | chr1:630505-633259
FORWARD LENGTH=1804
Length=1804
Score = 913 bits (494), Expect = 0.0
Identities = 539/561 (96%), Gaps = 2/561 (0%)
Strand=Plus/Plus
Query 242 TCACTGCAGGACACTCCGGAGTAGCAGCTGGAAGTGTTGCATGTGACCAGTATCACAAAT 301
||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 256 TCA-TGCCGGACACTCCGGAGTAGCAGCTGGAAATGTTGCATGTGACCAGTATCACAAAT 314
Query 302 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCCATAT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 315 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCTATAT 374
Query 362 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATTAATGTCAAGGGGCTACAATACT 421
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 375 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATCAATCCCAAGGGGCTACAATACT 434
Query 422 ACAACAGTCTTATTGATGAATTGATCGCTCATGGAATCCAGCCACACGTTACATTGCACC 481
|||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 435 ACAACAATCTTATTGATGAATTGATCACTCATGGAATCCAGCCACATGTTACATTGCACC 494
Query 482 ACTTTGATCTTCCACAAGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 541
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ACTTTGATCTCCCACAGGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 554
Query 542 TGAGAGGCTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 601
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TGAGAGACTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 614
Query 602 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGATTAA 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 615 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGAATAA 674
Query 662 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAATGGAAACTCTTCCA 721
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 675 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAAAGGAAACTCTTCCA 734
Query 722 CTGAGCCTTACATTGCCGTACACAACATGTTGCTTGCGCATGCTTCTGCAACAAACTTAT 781
||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct 735 TTGAGCCTTACATTGCCGTACACAACATGTTGCTCGCACACGCTTCTGCAACAATCTTAT 794
Query 782 ACAAGCAACAATACAAG-TTC 801
|||||||||| |||||| |||
Sbjct 795 ACAAGCAACAGTACAAGGTTC 815
Score = 512 bits (277), Expect = 3e-144
Identities = 323/345 (94%), Gaps = 3/345 (1%)
Strand=Plus/Plus
Query 793 TACA-AGTTCAAGCAACATGGATCAGTAGGCATTAGCGTATACACATACGGTGTTGTCCC 851
|||| ||| ||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 874 TACACAGTACAAGCAACATGGATCAGTAGGCATTAGCGTATACACATATGGAGCTGTCCC 933
Query 852 TTTAACTAACTCTG-GAGAGGATAAGCAGGCAACTGCTAGAGTAAATGACTTCTATATTG 910
|||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 934 TTTAACTAACTCTGTGA-AGGATAAGCAGGCAACAGCTAGAGTGAATGACTTCTATATTG 992
Query 911 GTTGGATTTTACATCCGTTGGTGTTTGGCGATTATCCTGAGAGGATGAAGACCAATGTTG 970
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 993 GTTGGATTTTACATCCGTTGGTGTTTGGTGATTATCCTGAGACGATGAAGACCAATGTTG 1052
Query 971 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGGACAAGTTAAGGGCGCATTTGATT 1030
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1053 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGAACAAGTTAAAGGCGCATTTGATT 1112
Query 1031 TCTTTGGAGTGATAAATTACATGGCACTTTACGTCAAGGACAACTCTTCCTCTCTGAAAC 1090
|| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1113 TCGTTGGAGTGATAAATTACATGGCGCTTTATGTCAAAGACAACTCTTCCTCTCTGAAAC 1172
Query 1091 CAAATGTCCAGGATTTCACCACAGACATGGCCGTGGAAATGACCT 1135
| ||| |||||||||||| |||||| || ||||||||||||||||
Sbjct 1173 CTAATCTCCAGGATTTCAACACAGATATAGCCGTGGAAATGACCT 1217
Score = 440 bits (238), Expect = 2e-122
Identities = 305/335 (91%), Gaps = 14/335 (4%)
Strand=Plus/Plus
Query 1141 ATGACTCCTCACAGGTCATCACTTGAGGACACAACGAGGGTTAAGTATCTGAGCTCATAC 1200
|||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||| |||
Sbjct 1340 ATGACTCCTCACAGCTCATCACTTGTGGACACAACAAGGGTGAAGTATCTGAGCTCGTAC 1399
Query 1201 ATTGAAGCAGTGCTTCATTCA---ATCAGGAAAGGATCGAACGTAAAAGGGTATTTTCAG 1257
||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1400 ATTAAAGCAGTGCTTCATTCACTCAGCAGGAAAGGATCGGACGTAAAAGGGTATTTTCAG 1459
Query 1258 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGCTACGAGAAGAGCTTTGGATTATTT 1317
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1460 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGGTACGAGAGGAGCTTTGGATTATTG 1519
Query 1318 TACGTGAACTTCAAGGATCCTTATCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1377
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1520 TACGTGGACTTCAAGGATCCTTCTCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1579
Query 1378 TCTTCCTTCCTCATGGGAACACTGCACCATCCATCAGACCATCACATGCTTCATCTTGAT 1437
||||||||||||| |||||||||||||||||||||| | | |||||| |||||||
Sbjct 1580 TCTTCCTTCCTCAAGGGAACACTGCACCATCCATCA-----T-A--TGCTTCGTCTTGAT 1631
Query 1438 CATTTGACTACTTCAATGTTTATAATGCTTAGTTG 1472
||||||| | ||||||| ||||||||||||||||
Sbjct 1632 CATTTGA-T--TTCAATGGTTATAATGCTTAGTTG 1663
Score = 183 bits (99), Expect = 3e-45
Identities = 107/111 (96%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 63 CTTCCCTCTAGACTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 122
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CTTCCCTCCAGGCTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 213
Query 123 TGAAGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCACGCCGG 173
||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 214 TGACGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCATGCCGG 264
Score = 99.0 bits (53), Expect = 1e-19
Identities = 62/66 (94%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 1 ATGAAGTTCTTGAGCAATAGTCTCATGCTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 60
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 65 ATGAAGTTATTGAGCAATAGTCTAATGTTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 124
Query 61 GTCTTC 66
|| |||
Sbjct 125 GT-TTC 129
> AT1G60270.1 | Symbols: BGLU6 | beta glucosidase 6 | chr1:22221677-22224257
REVERSE LENGTH=1570
Length=1570
Score = 167 bits (90), Expect = 3e-40
Identities = 396/538 (74%), Gaps = 43/538 (8%)
Strand=Plus/Plus
Query 281 CATGTGACCAGTATCACAAATACAAGGAAGATGTGAAGCTCATGGCAGACA-TGGGATTG 339
||||||| |||||||||||||||||||||||||||| | |||| |||| | ||
Sbjct 221 CATGTGATGGGTATCACAAATACAAGGAAGATGTGAAGTTGATGGTGGACACTAAC-TTA 279
Query 340 GAGGCTTACAGATTCTCCATATCCTGGTCAAGGCTTTTACC-AAGTGGAAGAGGACCAAT 398
|| |||| |||||||||||| || ||||| ||||| |||| || | ||||||| || |
Sbjct 280 GATGCTTTCAGATTCTCCATCTCTTGGTCTAGGCTAATACCTAA-TAGAAGAGGCCCTGT 338
Query 399 TAATGTCAAGGGGCTACAATACTACAACAGTCTTATTGATGAATT-G-ATCGCTCATGGA 456
||| ||||| || || | |||||| | |||||| | ||||| | | | ||||||
Sbjct 339 TAACCAAAAGGGTCTTCAGTTCTACAAGAATCTTATCCAAGAATTAGTAAA-C-CATGGA 396
Query 457 ATCCAGCCACACGTTACATTGCACCACTTTGATCTTCCACAAGC-CTTAGAAGATGAGTA 515
|| | ||| | |||||| ||||||||||||||| ||| ||| ||| || || || ||
Sbjct 397 ATTGAACCATATGTTACACTGCACCACTTTGATCATCCTCAATATCTT-GAGGACGAATA 455
Query 516 TGGAGGTTGGCTCAGCCA-A-GAAATCGT-GAGAGGCTTCACAGCTTATGCAGATACTTG 572
|| ||| ||||||| ||| | || |||| || || ||| || |||||||||||| |||
Sbjct 456 TGAAGGATGGCTCAACCACATGA--TCGTCGA-AGACTTTACTGCTTATGCAGATGTTTG 512
Query 573 CTTCA-AGGAGTTTGGAGATAGAGTGTCACATT--GGACTACTATAAACGAGGTCAATGT 629
||||| || |||||||| | | ||||| ||| |||| || || ||||||| |||| |
Sbjct 513 CTTCAGAG-AGTTTGGAAACC-A-TGTCAAATTCTGGACCACGATCAACGAGGGCAATAT 569
Query 630 GTT-TGCCCTTGGAGGGTATGACCA-GGG-ATTAACACCGCCTGCTCGATGCTCTCC-T- 684
|| | | ||||||| || || | ||| ||| ||||||||| ||| || | ||| |
Sbjct 570 ATTCT-CTATTGGAGGTTACAACGATGGGGATT--CACCGCCTGGTCGTTG-T-TCCATA 624
Query 685 CCATTTGGACTTAATTG-T-ACCAATGGAAACTCTTCCACTGAGCCTTACATTGCCGTAC 742
||| || | || || | | | |||| |||||||||||| || || |||| | |
Sbjct 625 CCA---GGCCAAAACTGCTTATTAG-GGAA-CTCTTCCACTGAACCATATATTGTAGGCC 679
Query 743 ACAACATGTTGCTTGCGCATGCTTCTGCAACAA-ACTTATACAAGCAACAAT-ACAAG 798
| || ||||||||||||| || |||| ||| ||| ||| |||||| ||| |||||
Sbjct 680 ATAATTTGTTGCTTGCGCACGCCTCTGTTTCAAGACT-ATATAAGCAA-AATTACAAG 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5