BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909976

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03120.1 | Symbols: ATRAB28, RAB28 | responsive to abscisic ...   440    6e-123


> AT1G03120.1 | Symbols: ATRAB28, RAB28 | responsive to abscisic 
acid 28 | chr1:752271-753140 FORWARD LENGTH=549
Length=549

 Score =  440 bits (238),  Expect = 6e-123
 Identities = 289/313 (92%), Gaps = 5/313 (2%)
 Strand=Plus/Plus

Query  1    ATGGCACAGCATCAGCATTCTCCTCAAAGGCTAAGAGATCAGGAAAACACACGGCCGCAT  60
            ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct  1    ATGGCACAGCATCAGCATTCTCCTCAAAGGCCAAGAGATCAGGACAACACACGGCCACAT  60

Query  61   GAACTATACGGCGA-CGTTTTCAGCGTCTCCGGTGATGATGACGTGGCAAGAAAGCAAGG  119
            || | ||||||| | |||||||||||||||| | | ||||||||||||||||||||||||
Sbjct  61   GATCAATACGGC-ATCGTTTTCAGCGTCTCC-G-G-TGATGACGTGGCAAGAAAGCAAGG  116

Query  120  CGTTAGTTTCTCTCAACCTGATCCAACGGTTGCGACGATGGGATCCGCAGACACGGTTAC  179
            || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct  117  CGATAGTTTCTCTCAACCTGACCCAACGGTTGCGACGATGGGATCCGTAGACACGGTTAC  176

Query  180  GATTGGAGAGGCTTTGGAGGCTACGGCTTTATCTCTTGGAGATAAGCCTGTGGATCATAA  239
            |||||| ||||||||||||||||| ||||| |||||||||||||||||||| || | || 
Sbjct  177  GATTGGGGAGGCTTTGGAGGCTACAGCTTTGTCTCTTGGAGATAAGCCTGTCGACCGTAG  236

Query  240  AGACGCAGCTGCCATTCAAGCCGCCGAAACTAGAGCCACCGGTGAGTCTATGGCTCGACC  299
            |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  237  AGACGCAGCTGCGATTCAAGCCGCCGAAACTAGAGCCACCGGTGAGTCTAAGGGTCGACC  296

Query  300  TGGTGGTCTTGCA  312
             ||||||||||||
Sbjct  297  CGGTGGTCTTGCA  309


 Score =  244 bits (132),  Expect = 5e-64
 Identities = 150/159 (94%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  349  GATGCTGCGGAGAAGCTTCCAGGAGACAAGGTGGTGACAAGTGAAGATGCCGAGGCGGTG  408
            ||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct  391  GATGCGGCGGAGAGGCTTCCCGGAGACAAGGTGGTGACAAGTGAAGATGCGGAGGCAGTG  450

Query  409  GTTGGAGCGGAACTTAGAAGCAGTTCTGAGATGAAGACAACTCCTGGTGGTGTGGCAGAT  468
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  451  GTTGGAGCGGAACTTAGAAGCAGTTCAGAGATGAAGACAACTCCTGGTGGTGTCGCAGAT  510

Query  469  TCCATGTCGGCGGGGGCAAGGCTCAATCAGCAACTCTAG  507
            ||||||||||| ||||||||||||||||| |||||||||
Sbjct  511  TCCATGTCGGCAGGGGCAAGGCTCAATCAACAACTCTAG  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5