BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909985

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02840.2 | Symbols:  | Small nuclear ribonucleoprotein famil...   292    1e-78


> AT4G02840.2 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr4:1264627-1266459 FORWARD LENGTH=686
Length=686

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 231/266 (87%), Gaps = 5/266 (2%)
 Strand=Plus/Plus

Query  90   AGGTGTAGATGTTAGTATGAACACTCATCTAAAGGCCGTAAAACTAACTCTGAAAGGGAA  149
            ||||||||||||||| |||||||||||| |||| || || ||||| ||||||||||||||
Sbjct  219  AGGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAAAGGGAA  278

Query  150  AAACCCGGTTACGTTAGACCACTTAAGTGTTAGGGGAAACAACATTCGGTATTATATCCT  209
             || || ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct  279  GAATCCAGTTACATTAGACCACTTAAGTGTCAGGGGAAACAACATTCGCTATTATATTCT  338

Query  210  TCCTGACAGCTTAAATCTCGAGACTTTGTTGGTTGAGGACACACCAAGAATCAAACCCAA  269
            ||| ||||| || ||||| ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct  339  TCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTGAAGACACTCCAAGAATCAAACCCAA  398

Query  270  AAAGCCAACTGCTGGTAGGAAGACACCAGCTCGCGGG-CGTGGCCGTGGAAGGGGTCGTG  328
            |||||||||||| |||| ||   || ||| ||| ||| ||||| |||||||| |||||||
Sbjct  399  AAAGCCAACTGCAGGTAAGATTCCAGCAGGTCG-GGGACGTGGTCGTGGAAGAGGTCGTG  457

Query  329  GACGCGGCCGTGTTGGTGGTCGTTAA  354
            |||| |||||||  | ||||||||||
Sbjct  458  GACGTGGCCGTG--G-TGGTCGTTAA  480


 Score =  143 bits (77),  Expect = 1e-33
 Identities = 85/89 (96%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAATGAGACAGTTTCAATTGAGCTTAAG  60
            ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct  100  ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAG  159

Query  61   AACGGAACCATTGTTCATGGAACTATTAC  89
            ||||||||||||||||||||||| |||||
Sbjct  160  AACGGAACCATTGTTCATGGAACCATTAC  188



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5