BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909999
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02930.1 | Symbols: | GTP binding Elongation factor Tu fami... 1509 0.0
> AT4G02930.1 | Symbols: | GTP binding Elongation factor Tu family
protein | chr4:1295409-1298404 REVERSE LENGTH=1757
Length=1757
Score = 1509 bits (817), Expect = 0.0
Identities = 1197/1377 (87%), Gaps = 39/1377 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCCGTTGCTCTTCGAAACTCTACCTCGAAACGCCTTGTTCCATTTTCTTCTCAG 60
||||| ||||||| |||||||||| ||| |||||| |||||||||||||| ||||| |||
Sbjct 51 ATGGCGTCCGTTGTTCTTCGAAACCCTAGCTCGAAGCGCCTTGTTCCATTCTCTTCCCAG 110
Query 61 ATCTA-TCTACGATGCGGAGGTTCC---A--TCC-C---CTCGATCTCACATTTC-GTCG 109
||||| ||| || || || | |||| | ||| | ||||||||| || ||| |||
Sbjct 111 ATCTACTCT-CGCTGTGGTGCTTCCGTTACTTCCTCTTACTCGATCTCTCA-TTCTATCG 168
Query 110 GAGGTGATGATCGT-TGTTCC-CCAAATTATG--CGACCTCCTGGTGGAGATCGATGGCT 165
| || ||||||| | | |||| | | || | | |||||| |||||||| |||||
Sbjct 169 GTGGAGATGATC-TCTCTTCCTCTACCTTCGGAACCTCCTCCTTCTGGAGATCCATGGCC 227
Query 166 ACTTTCACCCGAACA-AAACCTCATGTAAATGTTGGAACAATTGGACACGTTGATCATGG 224
||||| || |||| | ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 228 ACTTTTACTCGAA-ATAAACCTCATGTAAATGTTGGAACTATTGGGCATGTTGATCATGG 286
Query 225 GAAGACCACTTTGACTGCTGCGATCACGAAGG-TGTTGGCTGAAGAAGGTAAAGCTAAGG 283
||||||||||| |||||||| ||||| |||| | || ||||| || || |||||||| |
Sbjct 287 CAAGACCACTTTAACTGCTGCAATCACAAAGGTTCTT-GCTGAGGAGGGCAAAGCTAAAG 345
Query 284 CTGTTGCGTTTGATGAAATTGATAAAGCTCCTGAAGAGAAGAAGAGAGGAATTACTATTG 343
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CTATTGCCTTTGATGAAATTGATAAAGCTCCTGAAGAGAAGAAGAGAGGAATTACTATTG 405
Query 344 CAACGGCTCATGTGGAGTACGAAAC-GACAAAGCGTCATTATGCTCATGTGGATTGCCCT 402
| ||||||||||||||||| ||||| | |||||||||| |||||||||||||||||||||
Sbjct 406 CCACGGCTCATGTGGAGTATGAAACTG-CAAAGCGTCACTATGCTCATGTGGATTGCCCT 464
Query 403 GGACACGCTGATTATGTTAAAAATATGATTACTGGAGCTGCACAAATGGATGGTGGAATT 462
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 465 GGACACGCAGATTATGTTAAAAATATGATTACTGGAGCTGCGCAAATGGATGGCGGAATT 524
Query 463 CTTGTGGTTTCCGCACCAGATGGACCAATGCCTCAAACTAAGGAGCATATTCTGCTTGCG 522
||||||||||| | |||||||||||| ||||| || || ||||| |||||||| |||||
Sbjct 525 CTTGTGGTTTCAGGACCAGATGGACCCATGCCGCAGACAAAGGAACATATTCTACTTGCA 584
Query 523 CGTCAGGTCGGCGTTCCATCGCTTGTATGCTTCCTGAATAAAGTTGATGCTGTTG-ATGA 581
|| ||||| || ||||| || ||||| |||||| |||| |||||||||| || || ||||
Sbjct 585 CGCCAGGTTGGTGTTCCCTCACTTGTGTGCTTCTTGAACAAAGTTGATG-TGGTGGATGA 643
Query 582 CCCAGAGTTGTTGGAGCTTGTAGAGATGGAACTGCGTGAACTTCTCAGCTTCTACAAGTT 641
||| ||| | ||||||||||| ||||||||||| ||||| || |||||||||||||||||
Sbjct 644 CCCTGAGCTCTTGGAGCTTGTCGAGATGGAACTACGTGAGCTCCTCAGCTTCTACAAGTT 703
Query 642 TCCTGGGGATGATATTCCCATCATTCGAGGATCTGCTCTGTCTGCATTGCAGGGTACAAA 701
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||
Sbjct 704 TCCTGGGGATGATATTCCCATCATCCGAGGATCTGCTCTGTCCGCATTACAGGGCACCAA 763
Query 702 CGAAGAAATTGGACGGAAAGCCATATTGAAGCTAATGGAAGCTGTAGATGAATATATACC 761
|| ||||||||| || |||| ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 764 TGATGAAATTGGAAGGCAAGCTATATTAAAGCTGATGGATGCTGTTGATGAATATATACC 823
Query 762 TGACCCAGTTCGCGTGCTTGATAAACCTTTCCTCATGCCAATTGAAGATGTTTTCTCGAT 821
|||||| |||||||| ||||| || |||||| | ||||||||||||||||||||||| ||
Sbjct 824 TGACCCTGTTCGCGTCCTTGACAAGCCTTTCTTGATGCCAATTGAAGATGTTTTCTCAAT 883
Query 822 TCAGGGACGTGGAACTGTTGCAACTGGCCGTATTGAACAGGGAACCATTAAAGTAGGTGA 881
||| |||||||||||||||||||| || ||||| ||||||||| ||||||||| |||||
Sbjct 884 TCAAGGACGTGGAACTGTTGCAACCGGTCGTATCGAACAGGGAGTCATTAAAGTGGGTGA 943
Query 882 AGAAGTTGAGATATTAGGGTTAA-GTCCGGGAC-T-T-CCACTGAAATCCACGGTAACTG 937
||||||||||||||| ||||| | || ||| | | ||||||||||| || |||||||
Sbjct 944 AGAAGTTGAGATATT-GGGTTTACGTGAGGGGGGTGTTCCACTGAAATCGACTGTAACTG 1002
Query 938 GTGTTGAGATGTTCAAGAAAATTTTGGATAATGGACAGGCTGGTGATAATGTAGGACTT- 996
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GGGTTGAGATGTTCAAGAAGATTTTGGATAATGGACAGGCTGGTGATAATGTAGGACTTC 1062
Query 997 TTGTTGCGTGGGCTAAAGAGAGAAGACATCCAGCGTGGAATGGTAATTGCTAAGCCTGGT 1056
|| | |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1063 TTCT-GCGTGGGCTAAAGAGAGAAGACATTCAGCGTGGAATGGTGATTGCTAAGCCTGGT 1121
Query 1057 TCTTGCAAGAC-TGCCAAGAAGTTTGAAGCGGAGATTTACGTGCTCACGAAGGATGAAGG 1115
|| |||||||| | | |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1122 TCATGCAAGACATAC-AAGAAGTTTGAAGCAGAGATTTACGTGCTCACAAAGGATGAAGG 1180
Query 1116 TGGACGTCATACCGCTTTTTTCTCCAACTACAGGCCTCAGTTTTATCT-GAGAACCGCTG 1174
||||||||| || || |||||||| |||||||||||||||||||| || ||| || || |
Sbjct 1181 TGGACGTCACACTGCATTTTTCTCTAACTACAGGCCTCAGTTTTA-CTTGAGGACTGCAG 1239
Query 1175 ATGTCACTGGAAAAGTAGAATTACCTGAAAATGTGAAGATGGTTATGCCCGGTGACAATG 1234
|| ||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1240 ATATCACTGGCAAAGTGGAATTACCCGAAAACGTGAAGATGGTTATGCCTGGTGACAATG 1299
Query 1235 TCACTGCAGTTTTCGAGCTAATCCTCCCTGTCCCACTTGAGACCGGTCAAAGATTTGCTC 1294
|||| || ||||||||| ||||| | ||||||||||| || || |||||||||||||| |
Sbjct 1300 TCACAGCTGTTTTCGAGTTAATCATGCCTGTCCCACTCGAAACAGGTCAAAGATTTGC-C 1358
Query 1295 T-AAGGGAAGGAGGTAGAACAGTTGGAGCTGGTGTGGTATCAAAAGTGATGAGCTAA 1350
| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1359 TTAAGGGAAGGAGGTAGAACAGTTGGAGCTGGTGTTGTATCAAAAGTGATGACCTAA 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5