BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910024
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03620.1 | Symbols: | ELMO/CED-12 family protein | chr1:904... 1347 0.0
> AT1G03620.1 | Symbols: | ELMO/CED-12 family protein | chr1:904319-906186
REVERSE LENGTH=860
Length=860
Score = 1347 bits (729), Expect = 0.0
Identities = 776/799 (97%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCGCGGGAAAGGCGAGAAAAAGGCAACAAAGAACCGCGATGGCAGCGGTCAAGTA 60
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 63 ATGAAGCGTGGGAAAGGCGAGAAAAAGGCAACAAAGAGCCGCGATGGCAGCGGTCAAGTA 122
Query 61 GTTCCGCTCACTGAACCAGTGGTTACAGCTACGGGTATGGTTGGAACAAGATCATGGATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTTCCGCTCACTGAACCAGTGGTTACAGCTACGGGTATGGTTGGAACAAGATCATGGATA 182
Query 121 GGAGGGCTCTTCACACGCTCCAATAGACGTCAAGAAAAGTCAGTCGAATACACTTTGTCT 180
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 183 GGAGGGCTCTTCACACGCTCCAATAGACGTCAAGACAAGGCAGTCGACTACACTTTGTCT 242
Query 181 CCTCTTCAGGAGGAAAGACTTCAAAGGCTACAAGATCGTATGGTTGTACCTTTCGACGAG 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 243 CCTCTTCAGGAGGAAAGACTTCAAAGGCTGCAAGATCGTATGGTTGTACCTTTCGACGAG 302
Query 241 ACACGCCCGGATCATCAGGAATCACTTAAAGCATTGTGGAATGTCGCGTTTCCGAATGTT 300
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 ACACGTCCTGATCATCAGGAATCACTTAAAGCATTGTGGAACGTCGCGTTTCCGAATGTT 362
Query 301 -AGTCTCACAGGTTTAGTAACAGAACAATGGAAAGAAATGGGATGGCAAGGTCCCAATCC 359
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CA-TCTCACGGGTTTAGTAACAGAACAATGGAAAGAAATGGGATGGCAAGGTCCCAATCC 421
Query 360 ATCTACCGATTTCAGGGGTTGCGGATTTATCGCTCTAGAGAATTTGCTATTTTCTGCAAG 419
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 422 ATCTACCGATTTCAGGGGTTGCGGATTTATCGCTCTAGAAAATTTACTATTTTCTGCAAG 481
Query 420 AACTTATCCGGTTTGTTTCCGGAGGCTATTGTTAAAACAAAGAGGCGACCGGGCAAAGTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AACTTATCCGGTTTGTTTCCGGAGGCTATTGTTAAAACAAAGAGGCGACCGGGCAAAGTG 541
Query 480 GGAGTACCCTTTTGCGGTGGCCGGAATCAACATTTCCTTCATGTTGATCCAAATGCTCGA 539
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 GGAGTACCCTTTTGCAGTGGCCGGAATCAACATCTCCTTCATGTTGATCCAAATGCTCGA 601
Query 540 TTTACAAAATAATCCAAAGCCAAAATGTCTTCCAGGAATGAATTTCCTCAAACTCTTAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTTACAAAATAATCCAAAGCCAAAATGTCTTCCAGGAATGAATTTCCTCAAACTCTTAGA 661
Query 600 AGAAGACGAGAAAGCATTCGATGTACTATACTGTATAGCTTTCGCAATGATGGATGCTCA 659
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 AGAAGACGAGAGGGCATTCGATGTACTATACTGTATAGCTTTCGCGATGATGGATGCTCA 721
Query 660 ATGGCTTGCAATGCACGCTTCTTACATGGAATTCAATGAAGTATTACAGGCGACTCGGAA 719
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 722 ATGGCTTGCAATGCACGCTTCTTACATGGAATTCAATGAAGTATTACAAGCAACTCGGAA 781
Query 720 TCAGCTAGAGAGAGAGCTTTCTTTGGATGATATTCATCGGATTCAAGATCTTCCTGCATA 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 TCAGCTGGAGAGAGAGCTTTCTTTGGATGATATTCATCGGATTCAAGATCTTCCTGCCTA 841
Query 780 CAATCTCTTGTTCCAATAG 798
|||||||||||||||||||
Sbjct 842 CAATCTCTTGTTCCAATAG 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5