BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910029
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03687.1 | Symbols: | DTW domain-containing protein | chr1:... 1044 0.0
> AT1G03687.1 | Symbols: | DTW domain-containing protein | chr1:918299-920507
FORWARD LENGTH=1356
Length=1356
Score = 1044 bits (565), Expect = 0.0
Identities = 601/619 (97%), Gaps = 0/619 (0%)
Strand=Plus/Plus
Query 606 GGATTTCCTACGCCAGAACAACACAGGGAAGCTATTGTGGCAGATATTTGGCGTCCAATC 665
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 GGATTTTCTACGCCAGAACAACACAGGGAAGCTGTTGTGGCAGATATTTGGCGTCCAATC 596
Query 666 AGCTACACTCTGCGTCTTTGGAATAGCTGAAGACGAAGAGATCATGTGGAATGAATTCAA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGCTACACTCTGCGTCTTTGGAATAGCTGAAGACGAAGAGATCATGTGGAATGAATTCAA 656
Query 726 GCGGGCAGGAAAAAATCAAGTCCGTTGCCTCTATCCCAACCACAACTCGGAATTAACTTT 785
||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 657 GCGTGCAGGAAAAAGCCAAGTCCGTTGCCTCTATCCCAACCACAACTCGGAAGTAACTTT 716
Query 786 CTCGGTTAAAGACGCTTTTGGTACTACGGCTTCAGAGAATCCTGGATCATCCATGACAGA 845
||||||||||||||||||||||| | ||||||||||||||| || |||||||| ||||||
Sbjct 717 CTCGGTTAAAGACGCTTTTGGTAGTTCGGCTTCAGAGAATCATGTATCATCCACGACAGA 776
Query 846 TGAAGATAAAACTCTGCATTTCATTTTGCTTGATGGCACGTGGAACAATTCTGCTGCAAT 905
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGAGGATAAAACTCTGCATTTCATTTTGCTTGATGGCACGTGGAACAATTCTGCTGCAAT 836
Query 906 GCTCAAGCGTTTAAAGGATCATGCAAAGGCAGTATGGGGAGATGAAGATCTTCCTTGTAT 965
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 837 GCTCAAGCGTTTAAAGGATCATGCAAAGTCAGTATGGGGAGACGAAGATCTTCCTTGTAT 896
Query 966 ATCTCTTGCAACCGGTGCATCAGCAATGCACAAACTCCGACCACAACCATCATGGGACCG 1025
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 897 ATCTCTTGCAACCGGTGCATCCGCAATGCACAAACTCCGGCCACAACCATCATGGGACCG 956
Query 1026 GACCTGCACGGCTGCAGCAGCAATTGGACTCCTATCTGAGCTTAGCCTTCTCCCACAGTT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GACCTGCACGGCTGCAGCAGCAATTGGACTCCTATCTGAGCTTAGCCTTCTCCCACAGTT 1016
Query 1086 AAGCAGCTACGAGTTAGACAAACAAGCTGATGCAGTCGAGGAAGCTTTGGTCATACTACT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AAGCAGCTACGAGTTAGACAAACAAGCTGATGCAGTCGAGGAAGCTTTGGTCATACTACT 1076
Query 1146 GGACTCACTAACAGGACGCCGCTTAAGAATGGGCAGGTCCATAACTCGTAAAGGCAGAAA 1205
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 GGACTCACTAACAGGTCGCCGCTTAAGAATGGGCAGGTCAATAACTCGTAAAGGCAGAAA 1136
Query 1206 CACCATCAGCATGTGCTAA 1224
|||||||||||||||||||
Sbjct 1137 CACCATCAGCATGTGCTAA 1155
Score = 773 bits (418), Expect = 0.0
Identities = 494/531 (93%), Gaps = 4/531 (1%)
Strand=Plus/Plus
Query 1 ATGCGTTATATCGCCGGAGCATCCGTA-CTCGATTTCTCTCCGTCTCTACTGTTTCACAG 59
||||||| |||||| |||||||||||| | ||||||||||||||| |||||||||||| |
Sbjct 10 ATGCGTTGTATCGCTGGAGCATCCGTAGC-CGATTTCTCTCCGTCGCTACTGTTTCACCG 68
Query 60 CCGTTATCTCGGAGCAGTTGGCCGGAGACTGCTTATGACTTCCGCTAATTCT-CGTTATC 118
|||| |||||| ||| ||||||| |||| |||||||||||||| | ||| | |||| ||
Sbjct 69 CCGTAATCTCGTAGCTGTTGGCCAGAGATTGCTTATGACTTCCTC-GATTTTGCGTTCTC 127
Query 119 AGCCGAGGGAATTCGAAGGTTGTGATGACGGATTCATCTCGGTAGAGGAGTGGCGGAGAT 178
| ||||||||||||| | ||| ||||| ||| |||||||||||||||||||||||| ||
Sbjct 128 ATACGAGGGAATTCGACGTTTGCGATGAAGGAATCATCTCGGTAGAGGAGTGGCGGAAAT 187
Query 179 GGGGTCCGGTGTCTCCACTTCCAGCCGCGGTCAAACAGATTGTGGAGGATCTGAAAGTTC 238
||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 188 GGGGTCCGGTGTCTCCATTTCCATCCGCGGTCAAACAGATTGTGGATGATTTGAAAGTTC 247
Query 239 TGGAGTGTAAATTGGATTCTCCGATAGAGTTTGGTGGTAATGGTGGCAAGTTACAGGGAC 298
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 248 TGGAGTGCAAATTGGATTCTCCGATAGATTTTGGTGGTAATGGTGGCAAGTTACAGGGAC 307
Query 299 CGTTTGGTGCATACGAAGATAAGAAGCATAGGGCTACATATGAAGCATTAGATGACCCGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CGTTTGGTGCATACGAAGATAAGAAGCATAGGGCTACATATGAAGCATTAGATGACCCGG 367
Query 359 AGAAAAAGTTCCGGTTTTTCTCTGCTCGACAGATTGCTTGTCGGCTGCTCGGGAGCAGGG 418
|||||||||| || ||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 368 AGAAAAAGTTTCGTTTTTTTTCTGCTCGACAGGTTGCTTGTCGGCTGCTTGGGAGCAGGG 427
Query 419 GTTATTTATGCCAGAAGTGTTGGCTTGCTATGGAGGATTGCATGTGTTCATATGTCAAGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 428 GTTATTTATGCCAGAAGTGTTGGCTTGCTATGGAGGATTGCATGTGTTCATATGTTAAGC 487
Query 479 CATGTGGTTTATGGAAACGGATACGTTTTTGGCTGTATATGCATCCTAGGG 529
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CATGTGGTTTATGGAAACGGATACGTTTTTGGCTGTATATGCATCCTAGGG 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5