BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg910058 Length=555 Score E Sequences producing significant alignments: (Bits) Value AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069... 617 3e-176 AT5G03858.1 | Symbols: | Pseudogene of AT5G03960; IQD12 (IQ-do... 514 4e-145 AT1G76705.1 | Symbols: | calmodulin binding | chr1:28786450-28... 171 9e-42 > AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069978 REVERSE LENGTH=1357 Length=1357 Score = 617 bits (334), Expect = 3e-176 Identities = 453/505 (90%), Gaps = 29/505 (6%) Strand=Plus/Plus Query 5 CTCTCACAAATGAAGACATAAAAGCCACATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 64 ||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 692 CTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 751 Query 65 GTGATCGTATGTTGAAATACTTCCGCTCTCATCGGGAGAGAAGAAATCCTCATATGCTTC 124 | ||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| Sbjct 752 GCGATCGTATGTTGAAATACTCCCGGTCTCAACGGGAGAGAAGAAGTCCTCATATGCTTG 811 Query 125 TGGAGTCATTGTACACTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTA 184 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 TGGAGTCACTGTACGCTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTG 871 Query 185 AATCCAAGTCTGCAAAATCCATAAACTCATTTCTCATTCC------AA-G--TG------ 229 |||||||||||||||||||||| ||||||||||||||||| || | || Sbjct 872 AATCCAAGTCTGCAAAATCCATCAACTCATTTCTCATTCCAAGTGAAATGCTTGTCCCTA 931 Query 230 --AAA-T---GCTT-G-TCCCT--ACA-A-AA-ACTCTGGTGATGGACAAGATCTCTCCA 276 ||| | |||| | || | | | | || ||||||||||||||||||| ||||||| Sbjct 932 CAAAAGTAAAGCTTAGATCTTTGCAGAGACAAGACTCTGGTGATGGACAAGA-CTCTCCA 990 Query 277 TTTTCTTACCCGAGGAGATCTTTCAGCCGTTTGGAGCAGAGTCTATTGGAAGACGAGAGC 336 ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 991 TTTTCTTTCCCAAGGAGATCTTTCAGCCGTTTGGAGCAGAGTATATTGGAAGACGAGAGC 1050 Query 337 TGGTTTCAAAGCTCCAATGGTTTCCAGCCTTACATGAGTGTGACAGAGTCTGCAAGGGAA 396 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1051 TGGTTTCAAAGATCCAATGGTTTCCAGCCGTACATGAGTGTGACAGAGTCTGCAAGGGAA 1110 Query 397 AAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGAT 456 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1111 AAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGATCATGGATTCTTTGTTTGAT 1170 Query 457 AACTACAAGAAGGATGGGGATAAAG 481 ||||||||||||||||||||||||| Sbjct 1171 AACTACAAGAAGGATGGGGATAAAG 1195 > AT5G03858.1 | Symbols: | Pseudogene of AT5G03960; IQD12 (IQ-domain 12); calmodulin binding protein | chr5:1031564-1032032 REVERSE LENGTH=469 Length=469 Score = 514 bits (278), Expect = 4e-145 Identities = 359/394 (91%), Gaps = 22/394 (6%) Strand=Plus/Plus Query 100 GAGAGAAGAAATCCTCATATGCTTCTGGAGTCATTGTACACTAAGGATATGGGGATGAGA 159 |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1 GAGAGAAGAAGTCCTCATATGCTTGTGGAGTCATTGTACACTAAAGATATGGGGATGAGA 60 Query 160 AGCTGTCGGCTGGAACATTGGGGT-A--AATCCAAGTCTGCAAAATCCATAAACTCATTT 216 |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| Sbjct 61 AGCTGTCGGCTGGAACATTGGGGTGATCAATCCAAGTCTGCAAAATCCATAAACTAATTT 120 Query 217 CTCATTCCAAGTGAAATGCTTGTCCCTAC-AAA---AA-C-T----C-TGGTGATG-GAC 264 ||||||||||||||||||||||| ||||| ||| || | | | | || | | ||| Sbjct 121 CTCATTCCAAGTGAAATGCTTGTTCCTACAAAAGTGAAGCTTACAACTTTGT-A-GAGAC 178 Query 265 AAGATCTCTCCATTTTCTTACCCGAGGAGATCTTTCAGCCGTTTGGAGCAGAGTCTA-T- 322 |||| |||||||||||||| || ||||||| ||||||||||||||||||||||||| | Sbjct 179 AAGA-CTCTCCATTTTCTTTCCTAAGGAGATTTTTCAGCCGTTTGGAGCAGAGTCTATTA 237 Query 323 -TGGAAGACGAGAGCTGGTTTCAAAGCTCCAATGGTTTCCAGCCTTACATGAGTGTGACA 381 |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 238 GTGGAGGACGAGAGCTGGTTTCAAAGCTCCGATGGTTTGCAGCCTTACATGAGTGTGACA 297 Query 382 GAGTCTGCAAGGG-AAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCAT 440 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GAGTCTGCAAGGGCAAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCAT 357 Query 441 GGATTCTTTGTTTGATAACTACAAGAAGGATGGG 474 |||||||||||||||||||||||||||||||||| Sbjct 358 GGATTCTTTGTTTGATAACTACAAGAAGGATGGG 391 Score = 80.5 bits (43), Expect = 2e-14 Identities = 46/47 (98%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 510 CTCTGGTCTTCTTTTGTCTGTGAAAATAGTAAGATCA-CAACGCTAA 555 ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 392 CTCTGGTCTTCTTTTGTCTGTGAAAATAGTAAGATCAACAACGCTAA 438 > AT1G76705.1 | Symbols: | calmodulin binding | chr1:28786450-28787328 FORWARD LENGTH=651 Length=651 Score = 171 bits (92), Expect = 9e-42 Identities = 110/119 (92%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 5 CTCTCACAAATGAAGACATAAAAGCCACATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 64 ||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 173 CTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 232 Query 65 GTGATCGTATGTTGAAATACTTCCGCTCTCATCGGGAGAGAAGAAATCCTCATATGCTT 123 | ||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||| Sbjct 233 GCGATCGTATGTTGAAATACTCCCGGTCTCATCAGGAGAGAAGAAGTCCTCATATGCTT 291 Score = 135 bits (73), Expect = 3e-31 Identities = 75/76 (99%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 406 TCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGATAACTACAAG 465 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 298 TCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGTTAACTACAAG 357 Query 466 AAGGATGGGGATAAAG 481 |||||||||||||||| Sbjct 358 AAGGATGGGGATAAAG 373 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26624097910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5