BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910058
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069... 617 3e-176
AT5G03858.1 | Symbols: | Pseudogene of AT5G03960; IQD12 (IQ-do... 514 4e-145
AT1G76705.1 | Symbols: | calmodulin binding | chr1:28786450-28... 171 9e-42
> AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069978
REVERSE LENGTH=1357
Length=1357
Score = 617 bits (334), Expect = 3e-176
Identities = 453/505 (90%), Gaps = 29/505 (6%)
Strand=Plus/Plus
Query 5 CTCTCACAAATGAAGACATAAAAGCCACATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 64
||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 692 CTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 751
Query 65 GTGATCGTATGTTGAAATACTTCCGCTCTCATCGGGAGAGAAGAAATCCTCATATGCTTC 124
| ||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||
Sbjct 752 GCGATCGTATGTTGAAATACTCCCGGTCTCAACGGGAGAGAAGAAGTCCTCATATGCTTG 811
Query 125 TGGAGTCATTGTACACTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTA 184
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TGGAGTCACTGTACGCTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTG 871
Query 185 AATCCAAGTCTGCAAAATCCATAAACTCATTTCTCATTCC------AA-G--TG------ 229
|||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 872 AATCCAAGTCTGCAAAATCCATCAACTCATTTCTCATTCCAAGTGAAATGCTTGTCCCTA 931
Query 230 --AAA-T---GCTT-G-TCCCT--ACA-A-AA-ACTCTGGTGATGGACAAGATCTCTCCA 276
||| | |||| | || | | | | || ||||||||||||||||||| |||||||
Sbjct 932 CAAAAGTAAAGCTTAGATCTTTGCAGAGACAAGACTCTGGTGATGGACAAGA-CTCTCCA 990
Query 277 TTTTCTTACCCGAGGAGATCTTTCAGCCGTTTGGAGCAGAGTCTATTGGAAGACGAGAGC 336
||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 991 TTTTCTTTCCCAAGGAGATCTTTCAGCCGTTTGGAGCAGAGTATATTGGAAGACGAGAGC 1050
Query 337 TGGTTTCAAAGCTCCAATGGTTTCCAGCCTTACATGAGTGTGACAGAGTCTGCAAGGGAA 396
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1051 TGGTTTCAAAGATCCAATGGTTTCCAGCCGTACATGAGTGTGACAGAGTCTGCAAGGGAA 1110
Query 397 AAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGAT 456
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1111 AAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGATCATGGATTCTTTGTTTGAT 1170
Query 457 AACTACAAGAAGGATGGGGATAAAG 481
|||||||||||||||||||||||||
Sbjct 1171 AACTACAAGAAGGATGGGGATAAAG 1195
> AT5G03858.1 | Symbols: | Pseudogene of AT5G03960; IQD12 (IQ-domain
12); calmodulin binding protein | chr5:1031564-1032032
REVERSE LENGTH=469
Length=469
Score = 514 bits (278), Expect = 4e-145
Identities = 359/394 (91%), Gaps = 22/394 (6%)
Strand=Plus/Plus
Query 100 GAGAGAAGAAATCCTCATATGCTTCTGGAGTCATTGTACACTAAGGATATGGGGATGAGA 159
|||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 GAGAGAAGAAGTCCTCATATGCTTGTGGAGTCATTGTACACTAAAGATATGGGGATGAGA 60
Query 160 AGCTGTCGGCTGGAACATTGGGGT-A--AATCCAAGTCTGCAAAATCCATAAACTCATTT 216
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 61 AGCTGTCGGCTGGAACATTGGGGTGATCAATCCAAGTCTGCAAAATCCATAAACTAATTT 120
Query 217 CTCATTCCAAGTGAAATGCTTGTCCCTAC-AAA---AA-C-T----C-TGGTGATG-GAC 264
||||||||||||||||||||||| ||||| ||| || | | | | || | | |||
Sbjct 121 CTCATTCCAAGTGAAATGCTTGTTCCTACAAAAGTGAAGCTTACAACTTTGT-A-GAGAC 178
Query 265 AAGATCTCTCCATTTTCTTACCCGAGGAGATCTTTCAGCCGTTTGGAGCAGAGTCTA-T- 322
|||| |||||||||||||| || ||||||| ||||||||||||||||||||||||| |
Sbjct 179 AAGA-CTCTCCATTTTCTTTCCTAAGGAGATTTTTCAGCCGTTTGGAGCAGAGTCTATTA 237
Query 323 -TGGAAGACGAGAGCTGGTTTCAAAGCTCCAATGGTTTCCAGCCTTACATGAGTGTGACA 381
|||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 238 GTGGAGGACGAGAGCTGGTTTCAAAGCTCCGATGGTTTGCAGCCTTACATGAGTGTGACA 297
Query 382 GAGTCTGCAAGGG-AAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCAT 440
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGTCTGCAAGGGCAAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCAT 357
Query 441 GGATTCTTTGTTTGATAACTACAAGAAGGATGGG 474
||||||||||||||||||||||||||||||||||
Sbjct 358 GGATTCTTTGTTTGATAACTACAAGAAGGATGGG 391
Score = 80.5 bits (43), Expect = 2e-14
Identities = 46/47 (98%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 510 CTCTGGTCTTCTTTTGTCTGTGAAAATAGTAAGATCA-CAACGCTAA 555
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 392 CTCTGGTCTTCTTTTGTCTGTGAAAATAGTAAGATCAACAACGCTAA 438
> AT1G76705.1 | Symbols: | calmodulin binding | chr1:28786450-28787328
FORWARD LENGTH=651
Length=651
Score = 171 bits (92), Expect = 9e-42
Identities = 110/119 (92%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 5 CTCTCACAAATGAAGACATAAAAGCCACATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 64
||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 173 CTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 232
Query 65 GTGATCGTATGTTGAAATACTTCCGCTCTCATCGGGAGAGAAGAAATCCTCATATGCTT 123
| ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||||
Sbjct 233 GCGATCGTATGTTGAAATACTCCCGGTCTCATCAGGAGAGAAGAAGTCCTCATATGCTT 291
Score = 135 bits (73), Expect = 3e-31
Identities = 75/76 (99%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 406 TCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGATAACTACAAG 465
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 TCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGTTAACTACAAG 357
Query 466 AAGGATGGGGATAAAG 481
||||||||||||||||
Sbjct 358 AAGGATGGGGATAAAG 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5