BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910061
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03930.1 | Symbols: ADK1, CKL9ALPHA, CKL9BETA | dual specifi... 1554 0.0
AT5G44100.1 | Symbols: ckl7 | casein kinase I-like 7 | chr5:177... 802 0.0
> AT1G03930.1 | Symbols: ADK1, CKL9ALPHA, CKL9BETA | dual specificity
kinase 1 | chr1:1004769-1008370 FORWARD LENGTH=2338
Length=2338
Score = 1554 bits (841), Expect = 0.0
Identities = 903/934 (97%), Gaps = 0/934 (0%)
Strand=Plus/Plus
Query 6 TCACAGGCACATTCCGTACAGAGAAAACAAAAATCTCACTGGAACAGCTCGGTATGCAAG 65
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1153 TCACAGGCACATACCGTACAGAGAAAACAAAAACCTCACTGGAACAGCTCGGTATGCAAG 1212
Query 66 TGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTA 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTA 1272
Query 126 TGTGCTTATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAA 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TGTGCTGATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAA 1332
Query 186 GAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAGCAACTCCTATAGAGGTATTGTG 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 GAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAGCAACTCCTATAGAGGTCTTGTG 1392
Query 246 TAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCGCTACGGTTTGA 305
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1393 TAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCTCTACGGTTTGA 1452
Query 306 TGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAGG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAGG 1512
Query 366 TTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAAGTATCCTCAGATTGGTTCCAG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAAGTATCCTCAGATTGGTTCCAG 1572
Query 426 CTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAAACCGGGGTTAACTGCAGG 485
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1573 CTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAACCCGGGCTTAACTGCAGG 1632
Query 486 ACCTTCTCTCGAAAAACCGGAGAGGATTGCTGGAAAGGATACTCGGGAGAACCGGTTCTC 545
| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1633 AGCTTCTCTCGAAAAACAGGAGAGGATTGCTGGAAAGGAGACTCGCGAGAACCGGTTCTC 1692
Query 546 GGGTGCAGTTGAGGCTTTCTCAAGAAGGCATCCGACAACTTCTACTCCGCGTGATCGCTC 605
||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1693 GGGTGCAGTAGAGGCTTTCTCAAGAAGGCATCCGGCAACTTCTACTACTCGTGATCGCTC 1752
Query 606 GGCATCAAGAAACTCTGATGATGGGCCTTTGTCTAAGCATCCGCCTGGTGACTCAGAAAG 665
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 GGCATCAAGAAACTCCGTTGATGGGCCTTTGTCTAAGCATCCGCCTGGTGACTCAGAAAG 1812
Query 666 ACCACGCAGTTCCTCAAGATATGGAAGCTCTTCGAGGAGAGCAGTTGCGTCAAGCTCTCG 725
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1813 ACCACGCAGTTCCTCAAGATATGGAAGCTCTTCGAGGAGAGCAATTCCGTCAAGCTCTCG 1872
Query 726 ACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGCCGTCTGGTAACTTCAAC 785
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1873 ACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGCCGTCTGGTGACATCAAC 1932
Query 786 TGGAGGAGTCGGAACAGTAAGCAACCGTGCATCAACAAGCCAGAGAATCCAATCAGGAAA 845
||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 1933 TGGAGGAGTCGGAACAGTAAGTAACCGCGCATCAACAAGCCAGAGAATCCAAGCAGGAAA 1992
Query 846 CGAATCCAAGACATCGTCTTTTTCGCGTGCAGCAAGAAACACTAGAGAAGATCCATTACG 905
|||||||| ||| ||||||||||||||||| || ||||||||| |||||||||||||| |
Sbjct 1993 CGAATCCAGGACGTCGTCTTTTTCGCGTGCTGCTAGAAACACTCGAGAAGATCCATTAAG 2052
Query 906 GAGGAGCTTAGAGCTTCTCTCTCTCAGAAAATGA 939
||||||||||||||||||| ||||||||||||||
Sbjct 2053 GAGGAGCTTAGAGCTTCTCACTCTCAGAAAATGA 2086
> AT5G44100.1 | Symbols: ckl7 | casein kinase I-like 7 | chr5:17749118-17752716
REVERSE LENGTH=2198
Length=2198
Score = 802 bits (434), Expect = 0.0
Identities = 795/963 (83%), Gaps = 50/963 (5%)
Strand=Plus/Plus
Query 6 TCACAGGCACATTCCGTACAGAGAAAACAAAAATCTCACTGGAACAGCTCGGTATGCAAG 65
||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 914 TCACAAGCACATTCCTTACAGAGAAAACAAAAATCTTACTGGGACAGCTCGGTATGCAAG 973
Query 66 TGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTA 125
||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 974 TGTTAACACTCACCTTGGAGTCGAACAAAGTCGAAGGGATGATTTGGAATCACTTGGTTA 1033
Query 126 TGTGCTTATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAA 185
||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1034 TGTTCTTATGTATTTTCTCAAAGGAAGCTTACCTTGGCAGGGATTAAAAGCTGGGACAAA 1093
Query 186 GAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAG-CAACTCCTATAGAGGTATTGT 244
||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||
Sbjct 1094 GAAGCAGAAGTATGACAGAATCAGCGAGAAAAAAGT-GTCAACTCCTATAGAGGTATTGT 1152
Query 245 GTAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCGCTACGGTTTG 304
||||||| |||||||| ||||| ||||| ||||||| ||||||||| || |||||||||
Sbjct 1153 GTAAAAACCAACCGTCCGAGTTCGTTTCATACTTTCATTACTGCCGATCTTTACGGTTTG 1212
Query 305 ATGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAG 364
||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 1213 ATGACAAACCTGATTACTCTTACCTCAAGAGGCTTTTCCGTGACTTGTTTATCCGAGAAG 1272
Query 365 GTTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAA-GTATCCTCAGATTGGTTCC 423
||||||| || ||||||||||||||||||||||| || || ||||||||| || || |||
Sbjct 1273 GTTATCAATTCGATTATGTATTTGACTGGACAGT-CTTAAAGTATCCTCAAATCGGATCC 1331
Query 424 AGCTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAAACCGGGGTT-AACTGC 482
|||||||||||||||||||| ||| || |||||||||| || ||||| || || ||| ||
Sbjct 1332 AGCTCTGGTTCTAGTTCACGAACAAGGCATCATACAACAGCGAAACCCGGATTCAAC-GC 1390
Query 483 AGGA-CCTTCTCTCGAAAAACCGGAGAGGATTGCT-GGAAAGGATACT-CGGGAGA-ACC 538
|| | ||| | | |||| || |||||||| || |||||||| || | || | |
Sbjct 1391 AG-ATCCTA-T-T-GAAAGACAAGAGAGGATC-CTAGGAAAGGAAACAACCCGATATAAA 1445
Query 539 GGTTCTCGGGTGCAGTTGAGGCTTTCTCAAGAAGGCATCCGAC-A-A-CTTCTACTCCGC 595
| | | |||||||| ||||| ||||| ||||| || ||||| | | ||||| | || |
Sbjct 1446 A-TCC-CAGGTGCAGTGGAGGCATTCTCCAGAAGACACCCGACTACAACTTCTTCGCCTC 1503
Query 596 GTGATCGCTCG-GCATCAAGAAACTCTGATGATGGGCCTTTGTCTAAGCATCCGCCTGGT 654
| ||||| || | |||||||||||| || || || ||||| |||||||| | | |||
Sbjct 1504 GAGATCGTTCTAG-ATCAAGAAACTCAGACGACGGACCTTTCTCTAAGCAGACACATGGA 1562
Query 655 GACTCAGAAAGACCACGCAGTTCCTCAAGATATGGA--AGCT-CTTCGAGGAGAGCAGTT 711
||||| |||||| || |||||||||||||||| || | || |||| |||| ||| |||
Sbjct 1563 GACTCCGAAAGAGCAAACAGTTCCTCAAGATATAGAGCATCTTCTTCTAGGAAAGCCGTT 1622
Query 712 GC-G-T-CAAGCTCTCGACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGC 768
|| | | ||||||| || |||||||| ||||||||||||||||| || ||| | || ||
Sbjct 1623 GCTGCTTCAAGCTCCCGGCCAAGTTCTGCAGGTGGACCAAGCGAAAGCCGAACTTCAAGT 1682
Query 769 CGTCTGGTAACTTCAA-C--TGGAGGAGTC-G-GAACAGTAAGCAA---CCGTGCATCAA 820
|||||||| | |||| | ||| || | | | | |||| | || |||| | ||||
Sbjct 1683 CGTCTGGTTTCCTCAAGCGGTGGTGGTGGCAGCGG-CAGTG-GAAATGGCCGTCCCTCAA 1740
Query 821 CAAGCCAGAGAATCCAATCAGGAAACGAATCCAAGACATC-GTCTTTTTCGCGTGCA--- 876
| ||||||||| | ||| | ||| | ||||||||||| || |||||| || ||||||
Sbjct 1741 CTAGCCAGAGAGTGCAAGCTGGATATGAATCCAAGAC-TCTGTCTTTCTCTCGTGCAACA 1799
Query 877 GC---AAGAAACACTAGAGAAGATCCATTACGGAGGAGCTTAGAGCTTCTCTCTCT-CAG 932
|| |||||||||| | ||||||| |||| | | ||||| |||||||||||||| | |
Sbjct 1800 GCGGCAAGAAACACTCGGGAAGATCAATTAAG-A--AGCTTCGAGCTTCTCTCTCTTCGG 1856
Query 933 AAA 935
|||
Sbjct 1857 AAA 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5