BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910067

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03982.1 | Symbols:  | PAK-box/P21-Rho-binding family protei...   422    2e-117


> AT1G03982.1 | Symbols:  | PAK-box/P21-Rho-binding family protein 
| chr1:1022251-1023719 REVERSE LENGTH=1290
Length=1290

 Score =  422 bits (228),  Expect = 2e-117
 Identities = 422/507 (83%), Gaps = 48/507 (9%)
 Strand=Plus/Plus

Query  45    AGAAAATGAGAAAGA-GCAAGAGATGCAAATTGGAAGTCCAACAGATGTAAAGCATGTTG  103
             |||||| |||||||| || ||||||||||||||||| ||||||||||||||| |||||||
Sbjct  604   AGAAAACGAGAAAGAGGC-AGAGATGCAAATTGGAACTCCAACAGATGTAAAACATGTTG  662

Query  104   CTCACATTGGTTGGGATGGAGGATCTGTCAATCAAAATCCACCCAGCTGGATG--A-A--  158
             |||||||||||||||||||||| ||||||||||| ||||||||||||||||||  | |  
Sbjct  663   CTCACATTGGTTGGGATGGAGGCTCTGTCAATCATAATCCACCCAGCTGGATGAAAGATT  722

Query  159   T----G-ATT---T---TA---A----AG--TATCGGGAAATATCAAGGAGGATGCTTCA  198
             |    | |||   |   ||   |     |  |||| ||||||||||||||||||||||||
Sbjct  723   TCAAAGTATTGGGTGGATATTCACCGGCGCTTATC-GGAAATATCAAGGAGGATGCTTCA  781

Query  199   TGCATTTCTGAAGATTTGACACGGTCACGTGATAAACCGGGACTTCAAAAATCGTCGAGA  258
             ||||||| |||||||| ||| ||||||||||||| |||| |||||| |||||||||||||
Sbjct  782   TGCATTTTTGAAGATTCGACTCGGTCACGTGATATACCGAGACTTCCAAAATCGTCGAGA  841

Query  259   GAGCGTTGGAGCACTTTAGGTGGTTCACCAACAAAAGAAGGA-C-C-ACGACGTGGATCT  315
             ||||||| ||||||||||||||||||||||||||||||| || | | |||||||||||||
Sbjct  842   GAGCGTTCGAGCACTTTAGGTGGTTCACCAACAAAAGAACGATCACGACGACGTGGATCT  901

Query  316   TCGCATTGCAGTGGAAACCCTAAAGTTTCACGGAGATCA--AAG-GAATCTCCTGATATT  372
             || || |  | ||||||||||||||||||||||||||||  ||  |||||| ||| ||||
Sbjct  902   TCACAATATAATGGAAACCCTAAAGTTTCACGGAGATCATCAAAAGAATCTTCTGCTATT  961

Query  373   CCT-AACGATGGTTGT---AG-AA-AA-TCTCGTCGGAAAAAATCAAAGGATTCTGTAAA  425
             ||| || |||||| ||   |  || || |||||| | |||||||||||||| | |||| |
Sbjct  962   CCTCAA-GATGGTGGTTTTAATAAGAAATCTCGTAGAAAAAAATCAAAGGACTGTGTAGA  1020

Query  426   TGGTGGGTCTACAAGATCGTCACGACGAGCACGTGGATCTCA-GACAGAATCTATGATTG  484
             |||||| |||| ||||||||||||||||| |||||||||||| |  ||||||||| | ||
Sbjct  1021  TGGTGGATCTAGAAGATCGTCACGACGAGTACGTGGATCTCAAGT-AGAATCTATAAGTG  1079

Query  485   ATA-TTCA--AT-GTCTGATGCAGGAT  507
             ||  ||||  |  ||||||||||||||
Sbjct  1080  ATTCTTCATCAACGTCTGATGCAGGAT  1106



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5