BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910083
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04150.1 | Symbols: | C2 calcium/lipid-binding plant phosph... 2660 0.0
> AT1G04150.1 | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein | chr1:1081208-1084246
REVERSE LENGTH=3039
Length=3039
Score = 2660 bits (1440), Expect = 0.0
Identities = 1681/1797 (94%), Gaps = 17/1797 (1%)
Strand=Plus/Plus
Query 1 ATGACTGAAGCTAAAACCGGCACCGGCAATGAGAAGCTCGTGGTGGAGATAGTAGGGGCC 60
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGACTGAAGCTAAAACCGGCACTGGCAATGAGAGGCTCGTGGTGGAGATAGTAGGGGCC 60
Query 61 CACAATCTCATGCCAAAAGATGGCGAAGGA-TCTTCGTCTCCTTTTGTGGAAGTGGAGTT 119
||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||
Sbjct 61 CACAATCTCATGCCAAAAGATGGCGAA-GATTCTTCGTCACCTTTTGTGGAAGTGCAGTT 119
Query 120 CGAGAACCAACGTCTCC-GATCTAAGGTCAAACCCAAAGACTTAAACCCAATCTGGAACG 178
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CGAGAACCAACGTCTCCGGA-CTAAGGTCAAACCCAAAGACTTGAACCCAATCTGGAACG 178
Query 179 AGAAGCTCGTCTTCCACGTTATCGACGTCAACGACCTCAGACACAAAACCCTAGAAATCA 238
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 179 AGAAGCTCGTCTTCCACGTTATTGACGTCAACGACCTCAGACACAAAGCCCTAGAAATCA 238
Query 239 GCGTTTACAGCGAGAAGCGTTCCTCTAACAGCAGAAACTTCCTGGGAAAGGTTAGGGTTT 298
||| |||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 239 ACGTATACAACGAGAAGCGTTCTTCTAACAGTAGAAACTTCTTGGGAAAGGTTAGGGTTT 298
Query 299 TGGGTTCCAGCGTTGGAAGAGAAGGAGAGTCAGTCGTTCAACTCTACACTCTTGAAAAGA 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TGGGTTCCAGCGTTGGAAGAGAAGGAGAGTCAGTCGTTCAGCTCTACACTCTTGAAAAGA 358
Query 359 GAAGCCTTTTCTCGTCTGTGCGTGGAGAAATCAGCGTCAAACACTACATGACCACAACGG 418
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGCCTTTTCTCTTCCGTGCGTGGAGAAATCAGCGTCAAACACTACATGACCACAACGG 418
Query 419 GGGAGAACGGTGAGAATGTCCGTCGTGTTAAC-GGATCGGGTGGTTCAAAGAAAAGCAAG 477
|||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 419 CGGAGAACGGTGAGAATGTCCGTCGGGTTAACAGG-TCGGGTGGTTCAAAGAAAAGCAAA 477
Query 478 AAAGTACAGAACTTGAGCTCTTCCATGGCGATt---caacagcaacaacaacaacagcaa 534
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 478 AAAGTACAGAACGTGAGCTCTTCCATGGCGATTCAACAACAGCAGCAACAACAACAGCAA 537
Query 535 caaattgctcttcacaatcacaacaaaggaaatcaacaacaGAGTCAGCAGAACGGTCAA 594
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 538 CAAATTTCTCTTCACAATCACAACAGAGGAAATCAACAACAAAGTCAGCAGAACGGTCAA 597
Query 595 GGACAGAGGATGCTACCGTTTTATCCAAACCAAGGTGAGATTAAGCCTCTCGTGATAACC 654
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 598 GGACAGAGGATGCTACCGTTTTATCCACACCAAAGTGAGATAAAGCCTCTCGTGATAACC 657
Query 655 GCTCTTCCCGGTCCAAT-----G-CCCGGACCCAGACCCGTCGTTTACTCAAATGGGTCG 708
||||||||| ||||||| | ||||||||||||||| |||||||||| || ||||||
Sbjct 658 GCTCTTCCCAGTCCAATGCCCGGACCCGGACCCAGACCCATCGTTTACTCTAACGGGTCG 717
Query 709 AGTGAGTTTTCGCTTAAAGAGACAAAGCCATGTCTTGGAGGAACTGGTACTGGTGTTGGC 768
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 718 AGTGAGTTTTCGCTTAAAGAGACAAAGCCATGTCTTGGAGGAACAAGTAATGGTCTTGGC 777
Query 769 GGTTTGACTAATCACAAGGACAAAACAAGCTCGACTTACGATCTAGTTGAGCAAATGCAG 828
||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 778 GGTTTGAGTAGTCACAAGGACAAAACAAGCTCCACTTATGATCTAGTTGAGCAAATGCAG 837
Query 829 TACCTTTATGTTAGA-ATCGTGAAAGCTAAGGACTTGTCGGTATCCGGCGAAGTCGTGTC 887
||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 TACCTTTATGTTA-ATATCGTGAAAGCTAAGGACTTGTCGGTATTAGGCGAAGTCGTGTC 896
Query 888 GGAAGTGAAATTGGGTAATTACAGGGGAGTTACTAAAAAAGTGAGTTCGAATTCCAGTAA 947
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 897 GGAAGTGAAATTGGGTAATTACAGGGGAGTTACTAAAAAGGTGAGTTCAAATTCCAGTAA 956
Query 948 TCCAGAGTGGAATCAAGTCTTTGCCTTTTCCAAAGAAAGCATTCAATCATCCGTTGTTGA 1007
|||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||
Sbjct 957 TCCAGAGTGGAATCAAGTATTTGTCTTTTCCAAAGAAAGAATTCAATCATCCGTAGTTGA 1016
Query 1008 GCTTTTCGTCAAAGAAGGTAACAAAGATGAGTATACGGGTCGGGTCTGGTTTGATTTAAG 1067
||||||||| ||||||||||| |||||||||||||||||| | |||| ||||||||||||
Sbjct 1017 GCTTTTCGTTAAAGAAGGTAATAAAGATGAGTATACGGGTAGAGTCTTGTTTGATTTAAG 1076
Query 1068 CGAAATACCAACCCGTGTTCCTCCGGATAGTCCGTTAGCTCCGCAATGGTACAAGATAGA 1127
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CGAGATCCCAACCCGCGTTCCTCCGGATAGTCCGTTAGCTCCGCAATGGTACAAGATAGA 1136
Query 1128 GAATAGAAACGGTGGTAGAAGCAATGGAGAGATTATGGTGTCAGTGTGGTTCGGGACTCA 1187
|||||||||||| |||||| | ||||||||| ||||||| || |||||||||||||||||
Sbjct 1137 GAATAGAAACGGCGGTAGAGGTAATGGAGAGCTTATGGTTTCGGTGTGGTTCGGGACTCA 1196
Query 1188 AGCTGATGAGGCTTTTGCTGAGGCGTGGCATTCAAAGGCTGGAAATGTTCACATTGAGGG 1247
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1197 AGCTGATGAGGCTTTTGCGGAGGCGTGGCATTCAAAGGCTGGAAATGTTCACATCGAGGA 1256
Query 1248 ACTCTCATCGATCAAATCAAAGGTTTACTTGTCTCCTAAGCTATGGTATCTTAGGGTGTC 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1257 ACTCTCATCGATCAAATCAAAGGTTTACTTGTCTCCTAAGCTATGGTATCTTAGGATATC 1316
Query 1308 AGTAATTGAGGCTCAAGACGTTGCGATTATGGACAAGGGATCAGGTCTCATGAGGTTTCC 1367
||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1317 AGTGATTGAGGCTCAAGATGTTGCAATTATGGACAAGGGATCAAGTCTCATGAGGTTTCC 1376
Query 1368 AGAGCTTTCGGCGAAGCTTCAAGTCGGGAGTCAGATACTGAGGACTCCAGTCGCATCTAC 1427
|||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| |
Sbjct 1377 AGAGCTTTCGGCGAAGCTTCAAGTAGGGAGTCAGATACTGAGAACTGCAATCGCATCTGC 1436
Query 1428 AAGCCCCACGCAGAGCTTTTCAAATCCTTATTGGAACGAGGACTTGATGTTTGTAGTTGC 1487
|| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1437 AATCCCCACAAAGAGCTTTTCAAATCCTTATTGGAATGAGGATTTGATGTTTGTAGTTGC 1496
Query 1488 CGAGCCGTTTGAGGATTGCATTACAATTGTTGTGGAGGATCGTCTTGGTGGTGGTGCATT 1547
|||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||| |
Sbjct 1497 AGAGCCGTTTGAGGATTGCGTTACAGTTGTTGTAGAGGATCGTCTTAATGGTGGTGCAAT 1556
Query 1548 AGGAGGACAAAACGATGTGGCTGTTGGGAGGGTTCAAATTCCGGTTTCCGCTGTTGAGAG 1607
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 1557 AGGAGGACAAAACGATGTGGCTGTTGGGAGGGTTCAGATTCCGATTTCCGCTGTTGAAAG 1616
Query 1608 ACGAACGGGAGATACACCGGTTGGTTCAAGATGGTTTAGCTTAGATAACGGCAACAATAA 1667
|||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1617 ACGAACAGGAGATACACTGGTTGGTTCAAGATGGTTTAGCCTAGATAACGGCAACAATAA 1676
Query 1668 CAACCGGTTTGGTTCGAGGATTCATCTTAGATTGTCACTAGACGGTGGCTACCATGTTTT 1727
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1677 CAACCGGTTTGGTTCTAGGATTCATCTTAGATTGTCATTAGACGGTGGCTACCATGTTTT 1736
Query 1728 GGATGAGGCAACAATGTATAGCAGCGATGTTAGGCCGACCGCGAAAGAGCTTTGGaa 1784
|||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct 1737 GGATGAGGCAACAATGTATAACAGTGATGTTAGACCGACTGCGAAAGAGCTTTGGAA 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5