BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910096
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04280.1 | Symbols: | P-loop containing nucleoside triphosp... 2163 0.0
> AT1G04280.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:1143436-1146654
REVERSE LENGTH=1925
Length=1925
Score = 2163 bits (1171), Expect = 0.0
Identities = 1357/1447 (94%), Gaps = 11/1447 (1%)
Strand=Plus/Plus
Query 1 ATGGGGTATAAAGATGTGAAAATCTCCCCTTTGATTGAGAGGAAAGATTCAGGTCGACGA 60
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 276 ATGGGGTATAAAGATGTCAAAATCGCCCCTTTGATTGAGAGGAAAGACTCAGGTCGACGA 335
Query 61 TCAAACCTCGAGAGATTCTCCCACTATGTTGCAAGGCAGCTAGGATTCGAGGATCCAAAT 120
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 336 TCAAACCTAGAGAGATTCTCCCACTATGTTGCAAGGCAGCTCGGATTTGAGGATCCAAAT 395
Query 121 GAATACCCACAACTCTGCAAATTAGCAAATGGATATTTGTTGAAAAC-AAAGGGATACGA 179
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 396 GAATACCCACAACTATGCAAATTAGCAAATGGATATTTGTTGAAAACAAAAGGG-TATGA 454
Query 180 TGAGAATGTGTATGAGTATTTGGCGAATGAAGCTGAGGC-TGATTCTCTCTATGTTCATC 238
|||||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 455 TGAGAATGTGGATGAGTATTTGGAGAATGAAGCTGA-GCGTGATTCTCTCTATGTTCATC 513
Query 239 TCCTTGAAGAATTTGAGAGATGCATTCTCACTTATTTTGCTTTCAATTGGACCCAATCTT 298
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 514 TCCTTGAAGAATTTGATAGATGCATTCTCACTTATTTTTCTTTCAATTGGACCCAATCTT 573
Query 299 CCAGCCTCATCTCTCAGGCTTTAAGCGATGAATCGGATCAGAAAGTACCAAAACTCAAAG 358
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 574 CCAACCTCATCTCTCAGGCTTTAAGCGATGAGTCGGATCAGAAAGTTCCAAAACTCAAGG 633
Query 359 ATTTCGTGATGGCAGCGACAAGGAAACAGCGGTTTGAGAGAGTGACAAAAGACT-TGAAG 417
|||||||||||||||| |||||||||||| ||||||||||||| |||||||| | | |||
Sbjct 634 ATTTCGTGATGGCAGCAACAAGGAAACAGAGGTTTGAGAGAGTAACAAAAGA-TCTCAAG 692
Query 418 GTGACAAGGGTAATTTCGACATTAGTAAAAGAGATGAGAACCATCGGCAGCGGAAGCGGT 477
|||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||| ||
Sbjct 693 GTGAAAAGGGTAATTTCGACATTAGTAGAAGAGATGAGAGTCATTGGGAGCGGAAGCAGT 752
Query 478 GAGCCGCATTGTACGGAAGTAATGTCTCCGGTGGCTCACAGCAAACGAAGTCCCGTCCTC 537
||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 753 GAGCCACACTGTACGGAAGTAATGTCTCCGGTGGCTCATAACAAACGAAGTCCCGTCCTT 812
Query 538 CTCCTTATGGGCGGAGGAATGGGTGCCGGAAAAAGCACCGTCCTCAAAGATATCTTCCAA 597
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
Sbjct 813 CTCCTTATGGGCGGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTA 872
Query 598 GAGTCATTTTGGTCGGAGGCAGAGGCAGACGCGGTGGTGATAGAGGCGGATGCGTTTAAG 657
||||| ||||||||||||||| |||| ||||||||||| |||||||| || |||||||||
Sbjct 873 GAGTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGCGTTTAAG 932
Query 658 GAGACGGATGTTATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAA 717
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAA 992
Query 718 ACTGCTGAATTGGTCCATCAATCATCAACCGATGCTGCATCGTCCCTACTAGTAACAGCA 777
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 993 ACTGCTGAATTGGTTCATCAATCATCAACGGATGCTGCATCGTCCTTACTAGTAACAGCA 1052
Query 778 TTGAATGATGGACGTGATGTGATAATGGATGGGACATTATCATGGGAGCCATTCGTTGAA 837
||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1053 TTGAACGACGGACGTGATGTGATAATGGATGGAACATTGTCATGGGAGCCATTCGTCGAA 1112
Query 838 CAAATGATCGAAATGGCAAGAAACGTCCACAAACAAAAATATCGAATGGGCGTAGGCTAC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1113 CAAATGATCGAAATGGCAAGAAACGTCCACAAACAAAAATATCGAATGGGCGAAGGCTAC 1172
Query 898 AAGGTGTCCGAAGATGGGACAATAACCgaaaaatatt-gg--gaagaagaagaagaaacg 954
|||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1173 AAGGTGTCCGAAGAGGGGACGATAACCGAAAAATATTGGGAAGAAGAAGAAGAAGAAACG 1232
Query 955 aaagaaaacgggaaacaa-aaaaTCTTCAAACCTTACAGAATCGAGCTGGTCGGTGTGGT 1013
|||||||| || |||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1233 AAAGAAAATGGCAAACAACAAAATC-TGAAACCTTACAGAATCGAGCTGGTCGGTGTGGT 1291
Query 1014 TTGTGACGCTTATCTCGCTGTAGCAAGAGGCATAAGGAGAGCTCTAATTGTGAAGAGAGC 1073
||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1292 TTGTGACGCTTATCTTGCCGTAGCAAGAGGCATACGGAGAGCTCTAATGGTGAAGAGAGC 1351
Query 1074 AGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTCGCTAATGCATTCCCAAAGTA 1133
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1352 AGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTTGCTAATGCATTCCCAAAGTA 1411
Query 1134 TTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAG 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 TTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAG 1471
Query 1194 GCTCATAGCGTGGAAAGACGGAAATAGTAAGCTTCTGGTGGATCCAGAGGATTTTGAATG 1253
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1472 GCTTATAGCGTGGAAAGACGGAAATAGTAAGCTTCTGGTGGATCCAGAGGATATTGATTG 1531
Query 1254 TCTAAAACGGGTCAGCAGTCTTAACCCGGATGCAGAATCCATTTTTGAGCTTTACCCGGA 1313
||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 1532 TCTAAAACGGGTCAGCAGTCTCAACCCGGATGCAGAATCCATTTACGAGCTTTATCCGGA 1591
Query 1314 TCCGAGCCAATTATCCAAGCCCGGTTCTGTTTGGAATGATGTCGTTTTAGTCCCATCGAG 1373
||| ||||||||| ||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1592 TCCAAGCCAATTAAGCAAACCCGGTTCTGTTTGGAATGATGTTGTGTTAGTTCCATCGAG 1651
Query 1374 GCCCAAGGTCCAGAAGGAACTTAGCGATGCCGTCAGGAGAATTGAAAAGGCCCAACCAAA 1433
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1652 GCCCAAGGTCCAGAAGGAACTTAGCGATGCAATCAGGAGAATCGAAAAGGCCCAACCAAA 1711
Query 1434 AAATTGA 1440
|||||||
Sbjct 1712 AAATTGA 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5