BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910099
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04310.1 | Symbols: ERS2 | ethylene response sensor 2 | chr1... 2988 0.0
> AT1G04310.1 | Symbols: ERS2 | ethylene response sensor 2 | chr1:1154764-1157711
REVERSE LENGTH=2470
Length=2470
Score = 2988 bits (1618), Expect = 0.0
Identities = 1862/1978 (94%), Gaps = 24/1978 (1%)
Strand=Plus/Plus
Query 1 ATGTTAAAGACATTGTTAGTCCAATGGCTAG---TGTTCTTCTTCTTCGTAATCGGCTCC 57
||||||||||||||||||||||||||||| | | |||||||||||| ||||||| |||
Sbjct 181 ATGTTAAAGACATTGTTAGTCCAATGGCTTGTCTTCTTCTTCTTCTTCTTAATCGGTTCC 240
Query 58 GTCGCCACCGCCGCAGAAGACGACGGTAGCTTGTCGTTATGCAACTGCGACGACGAAGAC 117
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCGTCACCGCCGCAGAAGACGACGGTAGCTTGTCGTTATGCAACTGCGACGACGAAGAC 300
Query 118 AGTCTCTTTAGCTATGAGACAATCCTCGACTCGCAAAAAGTCGGCGACTTTCTTATCGCA 177
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AGTCTCTTTAGCTACGAGACAATCCTCAACTCGCAAAAAGTCGGCGACTTTCTTATCGCA 360
Query 178 ATCGCTTATTTCTCGATCCCAATCGAGCTCCTCTACTTCGTGAGCCGCACCAATGTGCCT 237
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 361 ATCGCTTATTTCTCGATCCCAATCGAGCTGGTTTACTTCGTGAGCCGCACCAATGTGCCT 420
Query 238 TCACCGTACAATTGGGTCGTCTGCGAGTTTATAGCCTTCATTGTCCTCTGTGGCATGACC 297
||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 421 TCACCTTACAATTGGGTGGTCTGCGAGTTTATAGCCTTCATTGTTCTCTGCGGCATGACC 480
Query 298 CATTTGCTCGCTGGTTTCACATACGGGCCTCACTGGGCTTGGGTCATGACAGCTGTCACT 357
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CATTTGCTCGCTGGTTTCACCTACGGGCCTCACTGGCCTTGGGTCATGACAGCTGTCACT 540
Query 358 GTCTTCAAGATGCTGACTGGTATCGTCTCTTTCCTCACGGCGCTCTCGTTAGTCACTCTC 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 GTCTTCAAGATGCTGACTGGTATCGTCTCTTTCCTCACGGCACTCTCGTTAGTCACTCTC 600
Query 418 TTACCATTGCTTCTTAAGGCTAAGGTTCGTGAGTTTATGTTGAGTAAGAAGACCAGAGAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTACCATTGCTTCTTAAGGCTAAGGTTCGTGAGTTTATGTTGAGTAAGAAGACCAGAGAG 660
Query 478 CTTGATCGTGAGGTTGGGATCATTATGAAGCAGACTGAGACGAGTTTGCATGTTCGTATG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGATCGTGAGGTTGGGATCATTATGAAGCAGACTGAGACGAGTTTGCATGTTCGTATG 720
Query 538 CTCACTACCAAGATTAGGACGTCTCTCGATCGACACACCATTCTATACACTACGCTTGTG 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 CTCACTACCAAGATTAGGACGTCTCTTGATCGACACACCATTCTATACACTACGCTTGTG 780
Query 598 GAGTTGTCCAAGACTCTTGGGCTCAAGAACTGTGCGGTTTGGATCCCGAATGAGATCAAG 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGTTGTCCAAGACTCTGGGGCTCAAGAACTGTGCGGTTTGGATCCCGAATGAGATCAAG 840
Query 658 ACGGAGATGAATCTTACGCACGAGTTAAGACCGAGGATCGATGATGAGAATGAGAATGAG 717
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 841 ACGGAGATGAATCTTACTCATGAGTTAAGACCGAGGATTGATGATGAGAATGAGAATGAG 900
Query 718 AATGTGGGTGGTTATGCTGGGTTTTCGATACCTATTACTGAGTCTGATGTTGTGAGGATT 777
|| | ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 901 CATTTTGGTGGTTATGCTGGGTTCTCGATACCGATTAGTGAGTCTGATGTTGTGAGGATT 960
Query 778 AAGAGAAGCGAAGAGGTGAATATGTTGAGTGCTGGTTCTGTGCTTGCCTCAGTGACTAGC 837
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 AAGAGAAGCGAAGAGGTGAATATGTTGAGCCCTGGTTCTGTGCTTGCCTCAGTGACTAGC 1020
Query 838 CGAGGCAAGCCAGGTCCTACGGTTGGGATAAGAGTCCCGATGCTTCGGGTTTGTAACTTT 897
||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 CGAGGGAAGTCAGGTCCTACGGTTGGGATAAGAGTCCCTATGCTTCGGGTTTGTAACTTT 1080
Query 898 AAAGGCGGGACACCTGAGGCGATTCACATGTGTTATGCAATCTTGGTGTGTGTGCTTCCA 957
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1081 AAAGGCGGGACACCAGAGGCGATTCACATGTGTTATGCGATATTGGTGTGTGTGCTTCCA 1140
Query 958 CTGAGACAGCCGCAGGGTTGGACTTATCAAGAGCTTGAGATTGTTAAGGTCGTGGCTGAT 1017
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 TTGAGACAGCCGCAGGCTTGGACTTATCAAGAGCTTGAGATTGTTAAGGTGGTGGCTGAT 1200
Query 1018 CAAGTGGCGGTTGCGATCTCTCACGCCGTGATTCTTGAAGAATCCCAGCTCATGAGAGAG 1077
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1201 CAAGTGGCGGTTGCAATCTCTCACGCCGTGATTCTTGAAGAATCTCAGCTTATGAGAGAG 1260
Query 1078 AAACTCGCGGAACAGAACCGAGCGCTTCAGGTTGCAAGGGAGAACGCGCTGAGAGCTAAT 1137
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1261 AAACTCGCTGAACAGAACCGAGCGCTTCAGGTTGCGAGGGAGAACGCACTGAGAGCTAAT 1320
Query 1138 CAAGCGAAGGCTGCGTTCGAGCAGATGATGAGCGATGCAATGAGGCGTCCTGTGCGGTCC 1197
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1321 CAAGCCAAGGCTGCGTTCGAGCAGATGATGAGCGATGCAATGAGGTGTCCTGTGCGGTCC 1380
Query 1198 ATTCTCGGGTTGCTTCCTTTGATACTTCAGGACGGGAAATTACCCGAGAACCAGACTGTT 1257
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1381 ATTCTCGGGTTGCTTCCTTTGATACTTCAGGATGGGAAGTTACCCGAGAACCAGACTGTT 1440
Query 1258 ATCGTTGATGCGATGAGGAGAACCAGCGAGTTACTTGTACAGCTTGTAAACAACGCCGGA 1317
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1441 ATCGTTGATGCAATGAGGAGAACCAGCGAGTTACTTGTACAGCTTGTAAACAATGCCGGA 1500
Query 1318 GATATTAACAATGGGACAATCCGCGCTGCAGAGACACACTATTTCAGTTTGCATTCGGTT 1377
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1501 GATATAAACAATGGGACAATCCGCGCTGCAGAGACTCATTATTTCAGTTTGCATTCGGTT 1560
Query 1378 GTGAAGGAGTCGGCTTGCGTGGCGAGGTGTTTATGCATGGCAAATGGTTTTGGTTTCTCA 1437
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GTGAAAGAGTCAGCTTGCGTGGCGAGGTGTTTATGCATGGCAAATGGTTTTGGTTTCTCA 1620
Query 1438 ACTGAAATTTATAGAGCATTGCCTGATTACGTCGTAGGCGATGATAGGAAGGTATATCAA 1497
||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| | ||||
Sbjct 1621 GCTGAAGTTTATAGAGCATTGCCTGACTACGTCGTAGGTGATGATAGAAAGGTCTTTCAA 1680
Query 1498 GTGATCTTGCATATGCTTGGGGTTTTAATGAACCGAAAGATCAAAGGGAATGTGACTTTC 1557
| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1681 GCGATTTTGCATATGCTTGGGGTTCTAATGAATCGAAAGATCAAAGGGAATGTGACTTTC 1740
Query 1558 TGGGTTTTTCCGGAAAACGGAAACTCAGAAGTATCAGAGAGGAAAGATATTCAAGAAGCG 1617
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1741 TGGGTTTTTCCGGAAAGCGGGAACTCAGACGTATCAGAGAGGAAAGATATTCAAGAAGCG 1800
Query 1618 GTTTGGCGACAATGCTATTCTAAAGAATACATTGAAGTTAGATTCGGGTTCGAGGTAGCT 1677
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| ||
Sbjct 1801 GTTTGGCGACATTGCTATTCGAAAGAATACATGGAAGTTAGATTCGGATTCGAGGTAACT 1860
Query 1678 GCAGAAGGTGAAGAGAGTAGTAGTAGTAGTA-----A----CCTGGAGGAGGAGGAGGAG 1728
|| |||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 1861 GCTGAAGGTGAAGAGAGTAGTAGTAGTAGTAGTGGTAGTAACCTGGAGGAGGAGGAAGAG 1920
Query 1729 ATTCCAAGTCTCAACGTCT-GCGAAAACATTGTAAAGTATATGCAAGGAAATATTCGGGT 1787
| ||| |||||||||| || || ||||||||||||||||||||||||| |||||||||||
Sbjct 1921 AATCCGAGTCTCAACG-CTTGCCAAAACATTGTAAAGTATATGCAAGGGAATATTCGGGT 1979
Query 1788 TGTTGAGGACTGTCTAGGTTTGGTGAAAAGCCTCTCGGTTGTTTTCCGGTTTCAACTCCG 1847
|||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1980 TGTTGAGGACGGTCTAGGTTTGGTGAAAAGCGTCTCAGTTGTTTTCCGGTTTCAACTCCG 2039
Query 1848 GCGATCGATAATGTC-ACGAGGCGGTGGTGGATATTCTGGAGAAACGTTTAGAACCTCAA 1906
||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 2040 GCGATCGATGATGTCGA-GAGGCGGTGG---ATATTCTGGAGAAACGTTTAGAACCTCAA 2095
Query 1907 CACCTCCTTCTACAAG----TGATCATTGGCGTGAGGAAGTGGGG-AGGGTAATGTAG 1959
| ||||| ||||| || ||||||||| ||| |||||| |||| |||| |||||||
Sbjct 2096 CTCCTCCGTCTACTAGCCACTGATCATTGACGTCAGGAAGGGGGGGAGGGGAATGTAG 2153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5