BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910140
Length=2898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04650.1 | Symbols: | unknown protein; Has 30201 Blast hits... 4512 0.0
> AT1G04650.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:1294893-1299002
REVERSE LENGTH=3093
Length=3093
Score = 4512 bits (2443), Expect = 0.0
Identities = 2722/2857 (95%), Gaps = 17/2857 (1%)
Strand=Plus/Plus
Query 49 TGGGAAGACTTCACTTGTCTTGACGTTTCCCAGTGTTTGTTGAACAAGGCAATTCTGCCT 108
|||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 247 TGGGAAGATTTCACATGTCTTGACGTTTCCCTGTGTTTGTTGAACAAGGCGATTCTGCCT 306
Query 109 GTCACTTCTAAATACCTCGCTTTGGATCGGCCTGATTGCTCCCATTACTTTCTTTCTTTT 168
|| |||| |||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 307 GTGGCTTCAAAATACCTCGCTTTGGATCGGCCTGATTGCTCACACTACTTTCTTGCTTTT 366
Query 169 GGTATTAAGGTCAGCCAATGGTGTGCTAAACATTTAAACATGTCTGTGATGTCGATGGAG 228
| ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 367 GCTATTAAGGTAAGCCAATGGTGTGCCAAACATTTAAACATGTCTGTTATGTCCATGGAG 426
Query 229 GAGTCTCAAGAGGAAGAGCATTCCAACATTTTCTTTCAGCTTCTTTTGGATTATCTTCAT 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 427 GAGTCTCAAGAGGAAGAGCATTCCAACATTTTCTTTCAGCTTCTTTTGGATTATCTTCGT 486
Query 289 TTTTCTGCCTCAAGCTTTACTGCTATTGGAAAAACTTGTTTCATGACTGATGAGGCCTCA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 487 TTTTCTGCCTCAAGCTTTACTGCTATTGGAAAAACTTGTTTCATGACTGATGATGCCTCA 546
Query 349 GCTGTTACAGTTCATAAGTTTGTTTCAGAGCAGCTGAATTTGACAAAGGAGGTGATAATG 408
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 547 GCTGTTACAGTTCATAAGTTTGTTTCAGAGCAGCTCAATTTGACAAAGGAGTTGATAATG 606
Query 409 AATGCCAAGAAAGTTGAATCCTTTTCCTCGGAGATTTTTAAGGCTGCGCAAGTGGTAATT 468
||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 607 AATTCCAAGAAAGTCGAATCCTTTTCCTCGGAGATTTTTAAGGCTGTGCAAGTGGTAATT 666
Query 469 GAGTCTACTGTTCGTCTGTGCAAAGAACACTCTCCAGCAGTGAATCATGACGT---TGAA 525
|| |||||||||||||||||||||||| |||||| | ||||||||| ||| || ||||
Sbjct 667 GATTCTACTGTTCGTCTGTGCAAAGAATACTCTCAAACAGTGAATCGTGAGGTAAGTGAA 726
Query 526 ATGAAGACTAATGGAAATTTAGGAAAGGCAAAGATGGAGGAAGGCAACGCTGTGGGTAAT 585
|||||||| | |||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 727 ATGAAGACGAGTGGACATGTAGGAAAGGCAAGGATGGAGGAAGGCAACGCTGTGGGTAAT 786
Query 586 TTGGTGAGCATGATAACGCTGGGAGTTAAATCTCTGAGTGATTTGGGTATGCTTGCTGCA 645
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 787 TTGGTGAGCATGATTACGCTGGGAGTTAAATCTCTGAGTGAATTGGGTATGCTTGCTGCA 846
Query 646 AGAGATGGTGGCAATCTTGTGGCCATTCTTAATACATCTTGGAAGGGTGTGATTACATTG 705
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGAGATGGTGGAAATCTTGTGGCCATTCTTAATACATCTTGGAAGGGTGTGATTACATTG 906
Query 706 CTTCAGA-TAGACAAGCAGACATTGGTATCTAAGGTAGATGTAGGAGAAATTATCTTAAA 764
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CTTCA-ACTAGACAAGCAGACATTGGTATCTAAGGTAGATGTAGGAGAAATTATCTTAAA 965
Query 765 GCTAATATCACTGATCAAGAAGTCCCTGAGATTTGCTGCTGAGGCTTGGTCTTGCTCGGT 824
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 966 GCTAATATCACTGATCAAGGACTCCCTGAGATTTGCTGCTGAGGCTTGGTCTTGCTCGGT 1025
Query 825 GAAGGAAAACATATCTGCAACAGAAGCCCGAAGGGTCTTTCTTCCTGTGAAATTTTATCT 884
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1026 GAAGGAAAACATATCTGCAACGGAAGCCAGAAGGGTCTTTCTTCCTGTGAAATTTTATCT 1085
Query 885 TATCAATGCTGTTAAAGTTGTGGCGCTGTTTCCAAGCCAGGCGTCTATGGTGTTCAAGGA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1086 TATCAATGCTGTTAAAGTTGTGGCGCTGTTTCCAAGCCAGGCGTCTATGGTGTCCAAGGA 1145
Query 945 AATTGCACTATGCATCTTGATGATCTCTGCTTTCAAAGTTTCACTGAGCCAACAAACTCT 1004
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TATAGCACTATGCATCTTGATGATCTCTGCTTTCAAAGTTTCACTGAGCCAACAAACTCA 1205
Query 1005 TGGCAAATCTGCAGGTGAAGTAATGACTGATCTTCTAGAGAAAACAACTGTAGATCTTCT 1064
||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1206 TGGAAAATCCGCAAGTGAAGTAATGACTGATCTTCTGGAGAAAACAACTGTAGATCTTCT 1265
Query 1065 AGGTGCACTGTTAAATGCAGCTGAACTAACACAGGAATTCAGGCTCACACTTCTTGATTC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AGGTGCACTGTTAAATGCAGCTGAACTAACACAGGAATTCAGGCTCACACTTCTTGATTC 1325
Query 1125 ATTGTTCGTTGATGAACAAGGTTTCTCAAACCAAATTTGTAAGAAACAGAGCCATGATTC 1184
|||||||||||||||| || |||||||||||| |||||||| ||||||||||||||
Sbjct 1326 ATTGTTCGTTGATGAA-----TT-CTCAAACCAAATCTGTAAGAAGCAGAGCCATGATTC 1379
Query 1185 TCACACAAAAACATCATTGGTGGATATCTTGTCTTTATCTGTTGAATCTGCGACAAGTGC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TCACACAAAAACATCATTGGTGGATATCTTGTCTTTATCTGTTGAATCTGCGACAAGTGC 1439
Query 1245 CAGAGATTTGCTCCTGGCCCGAGTTATATTGTTCCAATCTGTCATGAGGTATTCTTCCGA 1304
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 1440 TAGAGATTTGCTCCTGGCCCGAGTTGTATTGTTCCAGTCTGTCATGAGGTATTCTTTCGA 1499
Query 1305 GCTTGACAAAGATGCAAAGCTTGCAATCACCACAAAGCTGCAATGGTTTCTCGACATATT 1364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1500 GCTTGACAAAGATGCAAAGCTTGCAATCACCACAAAGCTGCAATGGCTTCTCGACATATT 1559
Query 1365 AGCGGACAAAGAGATTTATTCTTCAGTCCTTTCCTCTCAGCTACCAATGGCAGATGGTTC 1424
||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 AGCAGACAAAGAGGTTTACTCTTCAGTTCTTTCCTCTCAGCTACCAATGGCAGATGGTTC 1619
Query 1425 TGGGAAGATAATAATCTGGGAATCAATGTATTTAGCTCTGCTTCTGTCTTTCAAAACCCT 1484
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1620 TGGGAAGATAGTAATCTGGGAATCAATGTATTCAGCTCTGCTTCTGTCTCTCAAAACCCT 1679
Query 1485 TGTGATCATACTCTCTTCAACTCCTGCCTGGGAAGAGCTTGAAACATTCATACTCCAGAA 1544
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1680 TATGATCATACTCTCTTCAACTCCTGCCTGGGAAGAGCTTGAAACATTCCTACTTCAGAA 1739
Query 1545 TCTCTTGCATCCTCACTTCTTGTGTTGGCAGATAGTCATGGAACTCTGGTGCTTCTGGGT 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TCTCTTGCATCCTCACTTCTTGTGTTGGCAGATAGTCATGGAACTCTGGTGCTTCTGGGT 1799
Query 1605 TCGCCATGCCACTGAGGATTTGGTGGTCGATATGATTAATCAACTTTGTACATTCATGAT 1664
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1800 TCGTCATGCCACTGACGATTTGGTGGTCGATATGATTAATCAACTTTGTACATTCATTAT 1859
Query 1665 GTCAATGCCATCATCAGAAACACCGCTTTGCCCAGATTCCATGCTCAGAAGAACTACAAA 1724
|||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||
Sbjct 1860 GTCAATGCCATCATCAGAAACACCTCTTTGTCCAGATTCCGTTCTCAGAAGAACTACAAA 1919
Query 1725 GTCCATCTGCTTTCTTCTTACCCACAGCCCCAAATCTTTAACAGTTCAAGTTTACAAAAA 1784
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1920 GTCCATCTGCTTTCTTCTTACCCATAGCCCCAAATCTTTAACAGTTCAAGTTTACAAACA 1979
Query 1785 TATTTCCACTGAGAGCAGATCTGACTC-TGCACCAGGTGTATATCTAGCATTGCTGTTAG 1843
|||||| |||||||||||||||||| | |||||| | |||||||||||||||||||||||
Sbjct 1980 TATTTCTACTGAGAGCAGATCTGAC-CATGCACCTGATGTATATCTAGCATTGCTGTTAG 2038
Query 1844 ACGGGTTTCCGCTAAATTTTCTTCCAGACAGAATCAAAAACGACGCAAAGAGACAGATAT 1903
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2039 ACGGGTTTCCACTGAATTTTCTTCCAGACAGAATAAAAAACGACGCAAAGAGACAGATAT 2098
Query 1904 TTGCAGATTTCTTCAACTTCATCGAGAAATTT-ATTGAGAAACCATCATATTCCTCCAGA 1962
||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||
Sbjct 2099 TTGCAGATTTCTTCAACTTCATCGAGAAATTCGAT-GAGAAACCGTCAAATTCCTCCAGA 2157
Query 1963 GACACTGTGCTTGGAGCTCCAGTTTTCACACTCTCTGCTTGCCTTCGGATACTAAAGACG 2022
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 2158 TACACTCTGCTTGGAGCTCCAGTTTTCACAGTATCTGCTTGCCTTCGGATACTAAAGATG 2217
Query 2023 AGCATATCAGAGATTGATGCCAAAACTCTGAACTTTGTCGTCGCTCTCATTCAAAAGTAC 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 AGCATATCAGAGATTGATGCCAAAACTCTGAACTTTGTCGTCGCTCTCATTCAAAAGTAC 2277
Query 2083 AGAAACTCCAAAGATGAAACGACCAAGGATCGTTACAGTGAGATTCTCAGCGAAACACTA 2142
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 2278 AGAAACTCCAAAGATGAAACGACGAAGGAACGTTACAGTGAGATTCTCAGCGAAACATTA 2337
Query 2143 TCAATCATCTCAAGAAGCGATCAGCTATACACTTGCCAAGAGATGGATAATGTCATAACA 2202
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2338 TCTATCATCTCAAGAAGCGAACAGCTATACACTTGCCAAGAGATGGATAATGTCATAACA 2397
Query 2203 GAGCTTCAAAAGCTATTCATTTCAGAAACTGATCATCATCATAATCATCTCCGTAAGTCC 2262
||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct 2398 GAGCTTCAAAAGCTATTCAATTCAGAAACTAATCATCATCATAATCATCTTCGTAAGTCC 2457
Query 2263 AAGCCAAACCTTGCTCTCTTCTTGTCAGGACTCAGCAAATACGAGATGTCTGAAACCGAA 2322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2458 AAGCCAAACCTTGCTCTCTTCTTGTCAGGACTCAGCAAATACGAGATGTCTGAAACCAAA 2517
Query 2323 ACGTGTCCAAAGAGCCGTGCGGTTTGGGAACTCTACCATTTGCTTCTCAAGAAACGCCAC 2382
| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2518 AAGTGTCCAAAGAGCATTGCGGTTTGGGAACTCTACCATATGCTTCTCAGGAAACGCCAC 2577
Query 2383 TGGGCTTTGGTACACCATGCGGTTACTGCGTTTGGATACTTCTGTGCACGTACAAGCTGT 2442
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 TGGGCTTTGGTACACCACGCGGTTACTGCGTTTGGATACTTCTGTGCACGTACAAGCTGT 2637
Query 2443 AATCAGCTATGGAGATTCGTACCTGAAGACGCAGCTCTAGCCTTCGATATACCTTCTGGA 2502
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2638 AATCAGCTATGGAGATTCGTACCTGAAGACGCGGCTCTAGCCTTCGATATAGCTTCTGGA 2697
Query 2503 AAAGAAGCTAAAACAGAGCGGTTCATGTCGGAACTAAAGATGTTTTTGGAGAAAGAACAA 2562
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2698 AAAGAAGCGAAAACAGAGCGGTTCATGTCGGAATTAAAGATGTTTTTGGAGAAAGAACAA 2757
Query 2563 GCGCTTCTCTCAATCACACCTTCAGAAGAGGAACTCAAGTTACTTGCGAAAGAAGGCACC 2622
|||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 2758 GCGCTTCTTTCAATCACACCTTCAGAAGAAGAACTGGAGTTACTTTCGAAAGAAGGCACC 2817
Query 2623 AAGGTTAAGGCAACAGTGCAGAAGCTTCTAGAAGGAAGAAGCCAGAGGTCAATGGAAGTA 2682
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2818 GAGGTTAAGGCAACAGTGCAGAAGCTTCTAGAAGGAAGAAGCCAGAGGTCAATGGAAGTA 2877
Query 2683 GAGAAACGACCAAACAAGAAAAGGAAACTTCCAGAAGGAATTTGCAGAGGAATGGAGTTA 2742
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2878 GAGAAACGACCGAACAAGAAAAGGAAACTTCCAGAAGGAATTTGCAGAGGAATGGAGTTA 2937
Query 2743 TTGCAGAATGGAGTGAAGAGGATTAAGGAAGGTTTAAGCGAATTGAGGTCAGATGAAAAT 2802
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 2938 TTGCAGAATGGAGTGAAGAGGATTAACGAGGGTTTAAACGAATTGAGGTCAGATGAAAAT 2997
Query 2803 GAGAGTGAAGAGTTTCAAAAGAGTTTA-CTGAATCAGTTTTCGTGTCTTGAAGATTTAGT 2861
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 2998 GAGAGTGAAGAGTTTCAAAAGAGTTTATC-GAATCAGTTTTCGTGTCTTGAAGATTTGGT 3056
Query 2862 CTCTCATTTGTTAAGCCTCACCGCAGCTTCGGACTAA 2898
|||||||||||||||||||||||||||||||||||||
Sbjct 3057 CTCTCATTTGTTAAGCCTCACCGCAGCTTCGGACTAA 3093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144029293353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5