BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910152

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04778.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   433    7e-121


> AT1G04778.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 0 Blast hits 
to 0 proteins in 0 species (source: NCBI BLink). | chr1:1339892-1340327 
FORWARD LENGTH=306
Length=306

 Score =  433 bits (234),  Expect = 7e-121
 Identities = 268/284 (94%), Gaps = 3/284 (1%)
 Strand=Plus/Minus

Query  122  CTAAGCTCAAACTCTTGAACATGAGCAATATCTTTGCCATAAGC---ATCAGGCCAGCTT  178
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct  284  CTAAGCTCAAACTCTTGAACATGAGCAATATCTTTGCCATAAGCAATATCAGGCCAGCTT  225

Query  179  ACTTTCCTCTGTTCCAAGCTTTTCTCGGCCTCTGTCCTCATCTTGAGGTTGCTTTTGAGA  238
            |||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct  224  ACTTTCCTCTGTTCAAAGCTTTTCTCGGCCTCCGTCTTGATCTTGAGGTTGCTTTTGAGA  165

Query  239  CGGCAAGGCTCGCTGGAGACGGCCGTGCAGCTTCTTCCACCGTGTCTCTTAGGCGGTTGA  298
            ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct  164  CGGCAAGGCTCGCTGGAGACGGCAGTGCAGCTTCTCCCGCCGTGTCTCTTAGGCGGTTGA  105

Query  299  TGCTGTCGGCGCCGTCTTCCTCCTCCTCCTCGGGAGCCAAGTTGACCATCTTCGTCTTTC  358
            || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  104  TGTTGTCGCCGCCGTCTTCCTCCTCCTCCTCGGAAGCCAAGTTGACCATCTTCGTCTGTC  45

Query  359  GTGTTGGATTTATTAATAATTTCGTCAGAACAAGTAGTCCTTGA  402
            ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct  44   GTGTTGGATATATTAATAATGTCGTCAGAACAAGTAGTCCTTGA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5