BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910174

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04985.1 | Symbols:  | unknown protein; Has 37 Blast hits to...   966    0.0  


> AT1G04985.1 | Symbols:  | unknown protein; Has 37 Blast hits 
to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:1416343-1418482 REVERSE 
LENGTH=993
Length=993

 Score =  966 bits (523),  Expect = 0.0
 Identities = 560/578 (97%), Gaps = 1/578 (0%)
 Strand=Plus/Plus

Query  1    ATGAATCGGCTGAGAGGCCGAGGTGCATCGCTTCTGGGTTCGGCAGTTGTGCCTCAGCTG  60
            |||||||||||||||||||||||| || || |||||||||| ||| | ||||||||||||
Sbjct  192  ATGAATCGGCTGAGAGGCCGAGGTACACCGATTCTGGGTTCCGCACTCGTGCCTCAGCTG  251

Query  61   AAGAAAAAAGCCCTTAATTCATTGGTCGCCGTCCAGGATTCGTATCTCTCCACCAAGGAC  120
            |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  252  AAGAAAAAAGCCCTAAATTCATTGGTCGCCGTCCAGGATTCATATCTATCCACCAAGGAC  311

Query  121  TTGTTCGAGAGGCACAGGGTCGTGTTTACAGTTGGAACTTCTATAGCATCTGTTGCTACG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  TTGTTCGAGAGGCACAGGGTCGTGTTTACAGTTGGAACTTCTATAGCATCTGTTGCTACG  371

Query  181  GCTTGGATTGGTTACTCATTACGACATTACAATGAAACTAGAATTAATCAGAGGCTGGAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  372  GCTTGGATTGGTTACTCATTACGACATTACAATGAAACTAGAATTAATCAGAGGCTGGAG  431

Query  241  TCCATTGAGAATGCGATGAAAAACACCCAAGAGTTAGAACGAGGAGAACTGAAGAAGCTC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  432  TCCATTGAGAATGCGATGAAAAACACCCAAGAGTTAGAACGAGGAGAACTGAAGAAGCTC  491

Query  301  GTTGATCCAGTCGGTTCCAGGTTCACTACAACAATTGCAACCGCTGGAACCACTTTGATC  360
            |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct  492  GTTGATCCAGTCGGTTCCAGGTTCACTACAACAATTGCCACAGCGGGAACCACTTTGATC  551

Query  361  CTCGGGTATGGTTTGGGTTGGCGAGGCGGGATATGGTATGCAAATAGGAAGTTTAGAAGG  420
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  552  CTCGGGTATGGGTTGGGTTGGCGAGGCGGGATATGGTATGCAAATAGGAAGTTTAGAAGG  611

Query  421  GAGCAAATGAGATTGGCCGGGCAGTTAAAACCGAGAGAATGGAAGTTATTAGGAAGGATA  480
            |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  612  GAGCAAATGAGATTGGCCGGGCAGTTAAAACCGAGAGAATGGAAGTTACTAGGGAGGATA  671

Query  481  AAACCTCGAGCTTGGCCAACAACAAAGTTTCTCAGACGACCATTCCCAAGACAGAACAAA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  672  AAACCTCGAGCTTGGCCAACAACAAAGTTTCTCAGACGACCATTCCCAAGACAGAACAAA  731

Query  541  ACAGCAGAAAATGCTTTGAAGGCACCAGAAAGTGCGAG  578
            ||| |||||||||||||||||||||||||| ||| |||
Sbjct  732  ACAACAGAAAATGCTTTGAAGGCACCAGAATGTG-GAG  768



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5