BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg910175 Length=1236 Score E Sequences producing significant alignments: (Bits) Value AT1G04990.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1877 0.0 AT2G32930.2 | Symbols: ZFN2 | zinc finger nuclease 2 | chr2:139... 520 2e-146 > AT1G04990.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:1419141-1421639 REVERSE LENGTH=1567 Length=1567 Score = 1877 bits (1016), Expect = 0.0 Identities = 1125/1178 (96%), Gaps = 5/1178 (0%) Strand=Plus/Plus Query 1 ATGCGACCCCCCATGTCAGACACTCAGCATGTACAGAGCTCCATGGTGTCGATTCGATCT 60 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 186 ATGCGAACCCCCATGTCAGACACTCAGCATGTACAGAGCTCTTTGGTGTCGATTCGATCT 245 Query 61 TCCGACAAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATGAGAACGGCGGGGAGGAA 120 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 246 TCCGACAAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATGAGACCGGCGTGGAGGAA 305 Query 121 TC-GAATCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATTTAAGAACTGG 179 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 -CTGAATCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATTTAAGAACTGG 364 Query 180 TCTCTGTGGCTATGGAAGCAGTTGCCGTTACAATCATCCTACTCATCTTCCACAGGATGT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 TCTCTGTGGCTATGGAAGCAGTTGCCGTTACAATCATCCTACTCATCTTCCACAGGATGT 424 Query 240 TTCTTATCACAAGGAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299 | ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 425 TGCTTATTACAAGGAGGAGCTCCCTGAGAGAATTGGACAGCCGGATTGTGAGTATTTTCT 484 Query 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCCAAAGGATAGGAA 359 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 485 GAAGACAGGAGCTTGTAAGTACGGCCCAACTTGTAAATATCATCATCCAAAGGACAGGAA 544 Query 360 CGGTGTACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAGCC 419 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 545 CGGTGCACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCTGGGTGAGAAGCC 604 Query 420 ATGTCCCTATTACCTGCGAACGGGAACTTGCAGATTCGGAGTTGCTTGCAAATTCCACCA 479 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 ATGTCCATATTACCTGCGAACGGGAACTTGCAGATTCGGAGTTGCTTGCAAATTCCACCA 664 Query 480 TCCTCAACCTGATAATGGACATTCTACTGCATATGGAATGTCTAGCTTTCCTTCTGCA-A 538 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 665 TCCTCAACCTGATAATGGACATTCTACTGCATATGGAATGTCTAGCTTTCCTGCTGCAGA 724 Query 539 GTTTACAATATGCTAATGGATTAACAATGATGTCTACATATGGAACTTTGCCTCGTCCGC 598 ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 725 -TTTACGATATGCTAGTGGTTTAACAATGATGTCTACATATGGAACTTTGCCTCGTCCGC 783 Query 599 AAGTTCCTCAGTCCTACGTGCCAATCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTC 658 ||||||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct 784 AAGTTCCCCAGTCCTATGTGCCAATCCTGGTTTCACCCTCTCAAGGCTTTTTACCTCCTC 843 Query 659 AAGGCTGGGCCCCTTACATGGCTGCATCTAACTCCATGTACAATGTGAAGATTCAACCTT 718 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 844 AAGGCTGGGCCCCTTACATGGCTGCATCTAACTCCATGTACAATGTGAAGAATCAACCTT 903 Query 719 ATTACTCGGGTTCTAGTGCACCCATAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAG 778 ||||||| ||| ||||||| |||| ||||||||||||||||| |||||||||||||||| Sbjct 904 ATTACTCCGGTAGTAGTGCATCCATGGCCATGGCTGTGGCATTGAACCGTGGTTTGTCAG 963 Query 779 AAAGTTCTGAACAACCAGAATGTCGGTTTTTTATGAACACTGGGACATGTAAATACGGAG 838 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 964 AAAGTTCTGACCAACCAGAATGTCGGTTTTTTATGAACACCGGGACATGTAAATACGGAG 1023 Query 839 ACGATTGCAAATACAATCATCCCGGAGTAAGGATTTCACAACCACCACCAAGTCTTATAA 898 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 ACGATTGCAAATACAGCCATCCCGGAGTAAGGATTTCACAACCACCACCAAGTCTTATAA 1083 Query 899 ACCCTTTTGTTCTTCCAGCGAGACCTGGACAACCAGCTTGTGGTAACTTCAGGTCTTATG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1084 ACCCTTTTGTTCTTCCAGCGAGACCTGGACAACCAGCTTGTGGTAACTTCAGGTCTTATG 1143 Query 959 GATTCTGCAAGTTCGGAACAAACTGCAAATTCGACCACCCGATGCTGCCATATCAGGGCC 1018 ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1144 GATTCTGCAAGTTTGGACCAAACTGCAAATTCGACCACCCTATGCTGCCATATCCGGGCC 1203 Query 1019 TGGCCATAGCTTCTTCTCTGCCTACTCCTTATGCTTCACCTGTTTCAACCCATCAGAGGA 1078 || |||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1204 TGACCATGGCTACTTCTCTGCCTACTCCTTTTGCTTCACCTGTTACAACCCATCAGAGGA 1263 Query 1079 TCTCACCATCGCCAAACCGCTCTGATTCGAAGTCTCTTTCTAATGGTAAACCTGACGTGA 1138 |||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1264 TCTCACCAACACCAAACCGCTCTGATTCAAAGTCTCTTTCTAATGGTAAACCTGATGTGA 1323 Query 1139 AGAAGGAAAGCTCAGAGACTGAGAAACCAGACAA-GGA 1175 |||| ||||||||||||||||||||||||||||| ||| Sbjct 1324 AGAAAGAAAGCTCAGAGACTGAGAAACCAGACAATGGA 1361 > AT2G32930.2 | Symbols: ZFN2 | zinc finger nuclease 2 | chr2:13965758-13968957 REVERSE LENGTH=1998 Length=1998 Score = 520 bits (281), Expect = 2e-146 Identities = 939/1237 (76%), Gaps = 124/1237 (10%) Strand=Plus/Plus Query 11 CCATGTCAGACACT---CAGCATGTACAGAGCTCCA-TGGTGTCGATTCGATCTTCCGAC 66 ||||||| || ||| ||||| || |||| ||| | ||| ||||||||||||| ||||| Sbjct 537 CCATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGG-GTCGATTCGATCTCCCGAC 595 Query 67 AAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATG-AGAACGGCGGGGAGGAATCGAA 125 ||||| |||||| |||| |||| ||||||||| |||| || || |||| |||| | Sbjct 596 AAAATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAG-ACAATATGGAGCAATCTAG 654 Query 126 TCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATT-TAAGAACTGGTCTCT 184 ||| ||||| |||||||| ||||| |||||||||| |||| || | |||||||||| | Sbjct 655 TCCATATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCT-TTCTGAGAACTGGTCAGT 713 Query 185 GTGGCTATGGAAGCAGTTGCCGTTACAATCAT-C-C-TACTCATCTTCCACAGGATGTT- 240 |||||||||||| | ||| || ||||||||| | | |||| |||||||||||| | || Sbjct 714 GTGGCTATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTA 773 Query 241 TCTTATCACAAG-GAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299 | |||| || || || | | ||||||||| |||||| ||| | | | | | Sbjct 774 T-TTATTAC-AGAGACCAATTGCCTGAGAGAGTTGGACAGCC------T--G-A--CTGT 820 Query 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCC-AAAGGATAGGA 358 | |||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| || |||| Sbjct 821 G-AGACAGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGA 878 Query 359 ACGGTG-TACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAG 417 | |||| | ||| || ||||||||||| ||||||| |||||||| |||||||||||| Sbjct 879 ATGGTGCT-GGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAG 937 Query 418 CCATGTCCCTATTACCTGCGA-ACGGGAACT-TG-CAGATTCGGAGTTGCTTGCAAATT- 473 |||||||| |||||| ||| | || || | | || | ||||||||||||| |||||||| Sbjct 938 CCATGTCCATATTACATGC-AGACAGG-ATTGTGTC-GATTCGGAGTTGCCTGCAAATTC 994 Query 474 C--CA--C-CATCCTCA-----A-CCTGATAATGGACATTCTACTGCATATGGAATGTCT 522 | || | |||||||| | ||| |||||| || || ||||||||| |||||| Sbjct 995 CATCATCCTCATCCTCATTCTCAGCCTTCTAATGGCCA--CT-CTGCATATGCAATGTCC 1051 Query 523 AGCTTTCCTTCTGCAAGTTTACAATATGCTAATGGATTAACAA---TG---ATG--T-CT 573 |||||||| |||| |||| | ||||| | |||| | |||| || || | || Sbjct 1052 AGCTTTCCGTCTGTTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCT 1111 Query 574 ---ACATATGGAACT-TTGCCTCGTCCGCAAGTTCCTCAG--T----CCTACGTG-CCAA 622 ||||||||| || || || ||||| |||||||||||| | |||| || || | Sbjct 1112 GCAACATATGGAGCTATT-CCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTA 1170 Query 623 TCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTCAAGGCTGGGCCCCTTACATGGCTG 682 ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1171 -CATGGTTGCACCCTCCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTG 1229 Query 683 CATCTAACTCCATGTACAATGTGAAGATTCAACCTTATTACTCGGGTTCTAGTGCACCCA 742 |||||||| |||| |||||| |||| | ||||| | |||| ||||||| ||| | Sbjct 1230 CATCTAACCCCATTTACAATATGAAAACTCAAC-TCG--ACTCCAGTTCTAGCGCATCGG 1286 Query 743 TAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAGAAAGTTCTGAACA-ACCAGAATGT 801 | || || | ||| ||| | | | | ||| ||||||| | | | |||||| Sbjct 1287 TGGCTGTGACCGTGACATCACATCATCA-----CAGTTT-TTCTGAA-AGAGCTGAATGT 1339 Query 802 CGGTTTTTTATGAACACTGGGACATGTAAATACGGAGACGATTGCAAATACAATCATCCC 861 ||||||||||||||||||| || |||||||| || || ||||||||||||| |||||| Sbjct 1340 AGGTTTTTTATGAACACTGGAACTTGTAAATATGGTGATGATTGCAAATACAGTCATCC- 1398 Query 862 GGA-GTAAGGATT-TCACAACCACCACCAAGTCT-TATAAACCCTTTTGTTCTTCCAGCG 918 | | | ||| ||| | |||| ||||||||| ||| | | |||||| ||||||||||||| Sbjct 1399 GAAAGAAAG-ATTGTTACAATCACCACCAACTCTCT-TGAACCCTATTGTTCTTCCAGCA 1456 Query 919 AGACCTGGACAACCAGCTTGTGGTAACTTCA-GGTCTTATGGATTCTGCAAGTTCGGAAC 977 ||||| ||||| ||||| ||||||||||||| || || | ||||| |||||||| ||| | Sbjct 1457 AGACCAGGACAGCCAGCATGTGGTAACTTCAAGGCCT-ACGGATTTTGCAAGTTTGGAGC 1515 Query 978 AAACTGCAAATTCGACCACCCGATGCTGCCA-----T-AT--CA----GGGCCTGGCCAT 1025 |||||||||||| || ||| | ||||||| | | || || |||| ||||||| Sbjct 1516 AAACTGCAAATTTGATCACTCAATGCTGCTAAACCCTTATAACAATACGGGCTTGGCCAT 1575 Query 1026 AGCTTCTTCTCTGCCTACTCCTTATGCTT---C---ACCTGTTTCAACCCATCAGAGGAT 1079 | | |||||||||||||||||||| ||| | |||||||||||| || |||||| Sbjct 1576 -G-T-CTTCTCTGCCTACTCCTTATCCTTATGCTCCACCTGTTTCAACTAATTTGAGGAT 1632 Query 1080 CTCACCATCGCCAAACCGCTCTGAT-TCGAAGT-CTCTTTCTAATGGTAAACCTGAC-G- 1135 |||| | | |||| || ||||||| | || | | || || ||||||||||| | | | Sbjct 1633 CTCATCGCCACCAAGCCCCTCTGATAT-GAC-TACCCTATCCAATGGTAAACCCG-CTGC 1689 Query 1136 TGAAGAAGG--AAAGCTCAGAGACTGAGAAACCAGAC 1170 || ||||| |||||| ||||||||||||| |||| Sbjct 1690 TGCAGAAGCTCAAAGCTTGGAGACTGAGAAACAAGAC 1726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60742659450 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5