BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910175
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04990.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1877 0.0
AT2G32930.2 | Symbols: ZFN2 | zinc finger nuclease 2 | chr2:139... 520 2e-146
> AT1G04990.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:1419141-1421639 REVERSE LENGTH=1567
Length=1567
Score = 1877 bits (1016), Expect = 0.0
Identities = 1125/1178 (96%), Gaps = 5/1178 (0%)
Strand=Plus/Plus
Query 1 ATGCGACCCCCCATGTCAGACACTCAGCATGTACAGAGCTCCATGGTGTCGATTCGATCT 60
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 186 ATGCGAACCCCCATGTCAGACACTCAGCATGTACAGAGCTCTTTGGTGTCGATTCGATCT 245
Query 61 TCCGACAAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATGAGAACGGCGGGGAGGAA 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 246 TCCGACAAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATGAGACCGGCGTGGAGGAA 305
Query 121 TC-GAATCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATTTAAGAACTGG 179
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 -CTGAATCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATTTAAGAACTGG 364
Query 180 TCTCTGTGGCTATGGAAGCAGTTGCCGTTACAATCATCCTACTCATCTTCCACAGGATGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TCTCTGTGGCTATGGAAGCAGTTGCCGTTACAATCATCCTACTCATCTTCCACAGGATGT 424
Query 240 TTCTTATCACAAGGAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299
| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 425 TGCTTATTACAAGGAGGAGCTCCCTGAGAGAATTGGACAGCCGGATTGTGAGTATTTTCT 484
Query 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCCAAAGGATAGGAA 359
||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 485 GAAGACAGGAGCTTGTAAGTACGGCCCAACTTGTAAATATCATCATCCAAAGGACAGGAA 544
Query 360 CGGTGTACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAGCC 419
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 545 CGGTGCACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCTGGGTGAGAAGCC 604
Query 420 ATGTCCCTATTACCTGCGAACGGGAACTTGCAGATTCGGAGTTGCTTGCAAATTCCACCA 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATGTCCATATTACCTGCGAACGGGAACTTGCAGATTCGGAGTTGCTTGCAAATTCCACCA 664
Query 480 TCCTCAACCTGATAATGGACATTCTACTGCATATGGAATGTCTAGCTTTCCTTCTGCA-A 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 665 TCCTCAACCTGATAATGGACATTCTACTGCATATGGAATGTCTAGCTTTCCTGCTGCAGA 724
Query 539 GTTTACAATATGCTAATGGATTAACAATGATGTCTACATATGGAACTTTGCCTCGTCCGC 598
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 725 -TTTACGATATGCTAGTGGTTTAACAATGATGTCTACATATGGAACTTTGCCTCGTCCGC 783
Query 599 AAGTTCCTCAGTCCTACGTGCCAATCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTC 658
||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 784 AAGTTCCCCAGTCCTATGTGCCAATCCTGGTTTCACCCTCTCAAGGCTTTTTACCTCCTC 843
Query 659 AAGGCTGGGCCCCTTACATGGCTGCATCTAACTCCATGTACAATGTGAAGATTCAACCTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 844 AAGGCTGGGCCCCTTACATGGCTGCATCTAACTCCATGTACAATGTGAAGAATCAACCTT 903
Query 719 ATTACTCGGGTTCTAGTGCACCCATAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAG 778
||||||| ||| ||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 904 ATTACTCCGGTAGTAGTGCATCCATGGCCATGGCTGTGGCATTGAACCGTGGTTTGTCAG 963
Query 779 AAAGTTCTGAACAACCAGAATGTCGGTTTTTTATGAACACTGGGACATGTAAATACGGAG 838
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 964 AAAGTTCTGACCAACCAGAATGTCGGTTTTTTATGAACACCGGGACATGTAAATACGGAG 1023
Query 839 ACGATTGCAAATACAATCATCCCGGAGTAAGGATTTCACAACCACCACCAAGTCTTATAA 898
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ACGATTGCAAATACAGCCATCCCGGAGTAAGGATTTCACAACCACCACCAAGTCTTATAA 1083
Query 899 ACCCTTTTGTTCTTCCAGCGAGACCTGGACAACCAGCTTGTGGTAACTTCAGGTCTTATG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ACCCTTTTGTTCTTCCAGCGAGACCTGGACAACCAGCTTGTGGTAACTTCAGGTCTTATG 1143
Query 959 GATTCTGCAAGTTCGGAACAAACTGCAAATTCGACCACCCGATGCTGCCATATCAGGGCC 1018
||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1144 GATTCTGCAAGTTTGGACCAAACTGCAAATTCGACCACCCTATGCTGCCATATCCGGGCC 1203
Query 1019 TGGCCATAGCTTCTTCTCTGCCTACTCCTTATGCTTCACCTGTTTCAACCCATCAGAGGA 1078
|| |||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1204 TGACCATGGCTACTTCTCTGCCTACTCCTTTTGCTTCACCTGTTACAACCCATCAGAGGA 1263
Query 1079 TCTCACCATCGCCAAACCGCTCTGATTCGAAGTCTCTTTCTAATGGTAAACCTGACGTGA 1138
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1264 TCTCACCAACACCAAACCGCTCTGATTCAAAGTCTCTTTCTAATGGTAAACCTGATGTGA 1323
Query 1139 AGAAGGAAAGCTCAGAGACTGAGAAACCAGACAA-GGA 1175
|||| ||||||||||||||||||||||||||||| |||
Sbjct 1324 AGAAAGAAAGCTCAGAGACTGAGAAACCAGACAATGGA 1361
> AT2G32930.2 | Symbols: ZFN2 | zinc finger nuclease 2 | chr2:13965758-13968957
REVERSE LENGTH=1998
Length=1998
Score = 520 bits (281), Expect = 2e-146
Identities = 939/1237 (76%), Gaps = 124/1237 (10%)
Strand=Plus/Plus
Query 11 CCATGTCAGACACT---CAGCATGTACAGAGCTCCA-TGGTGTCGATTCGATCTTCCGAC 66
||||||| || ||| ||||| || |||| ||| | ||| ||||||||||||| |||||
Sbjct 537 CCATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGG-GTCGATTCGATCTCCCGAC 595
Query 67 AAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATG-AGAACGGCGGGGAGGAATCGAA 125
||||| |||||| |||| |||| ||||||||| |||| || || |||| |||| |
Sbjct 596 AAAATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAG-ACAATATGGAGCAATCTAG 654
Query 126 TCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATT-TAAGAACTGGTCTCT 184
||| ||||| |||||||| ||||| |||||||||| |||| || | |||||||||| |
Sbjct 655 TCCATATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCT-TTCTGAGAACTGGTCAGT 713
Query 185 GTGGCTATGGAAGCAGTTGCCGTTACAATCAT-C-C-TACTCATCTTCCACAGGATGTT- 240
|||||||||||| | ||| || ||||||||| | | |||| |||||||||||| | ||
Sbjct 714 GTGGCTATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTA 773
Query 241 TCTTATCACAAG-GAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299
| |||| || || || | | ||||||||| |||||| ||| | | | | |
Sbjct 774 T-TTATTAC-AGAGACCAATTGCCTGAGAGAGTTGGACAGCC------T--G-A--CTGT 820
Query 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCC-AAAGGATAGGA 358
| |||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| || ||||
Sbjct 821 G-AGACAGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGA 878
Query 359 ACGGTG-TACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAG 417
| |||| | ||| || ||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 879 ATGGTGCT-GGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAG 937
Query 418 CCATGTCCCTATTACCTGCGA-ACGGGAACT-TG-CAGATTCGGAGTTGCTTGCAAATT- 473
|||||||| |||||| ||| | || || | | || | ||||||||||||| ||||||||
Sbjct 938 CCATGTCCATATTACATGC-AGACAGG-ATTGTGTC-GATTCGGAGTTGCCTGCAAATTC 994
Query 474 C--CA--C-CATCCTCA-----A-CCTGATAATGGACATTCTACTGCATATGGAATGTCT 522
| || | |||||||| | ||| |||||| || || ||||||||| ||||||
Sbjct 995 CATCATCCTCATCCTCATTCTCAGCCTTCTAATGGCCA--CT-CTGCATATGCAATGTCC 1051
Query 523 AGCTTTCCTTCTGCAAGTTTACAATATGCTAATGGATTAACAA---TG---ATG--T-CT 573
|||||||| |||| |||| | ||||| | |||| | |||| || || | ||
Sbjct 1052 AGCTTTCCGTCTGTTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCT 1111
Query 574 ---ACATATGGAACT-TTGCCTCGTCCGCAAGTTCCTCAG--T----CCTACGTG-CCAA 622
||||||||| || || || ||||| |||||||||||| | |||| || || |
Sbjct 1112 GCAACATATGGAGCTATT-CCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTA 1170
Query 623 TCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTCAAGGCTGGGCCCCTTACATGGCTG 682
||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1171 -CATGGTTGCACCCTCCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTG 1229
Query 683 CATCTAACTCCATGTACAATGTGAAGATTCAACCTTATTACTCGGGTTCTAGTGCACCCA 742
|||||||| |||| |||||| |||| | ||||| | |||| ||||||| ||| |
Sbjct 1230 CATCTAACCCCATTTACAATATGAAAACTCAAC-TCG--ACTCCAGTTCTAGCGCATCGG 1286
Query 743 TAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAGAAAGTTCTGAACA-ACCAGAATGT 801
| || || | ||| ||| | | | | ||| ||||||| | | | ||||||
Sbjct 1287 TGGCTGTGACCGTGACATCACATCATCA-----CAGTTT-TTCTGAA-AGAGCTGAATGT 1339
Query 802 CGGTTTTTTATGAACACTGGGACATGTAAATACGGAGACGATTGCAAATACAATCATCCC 861
||||||||||||||||||| || |||||||| || || ||||||||||||| ||||||
Sbjct 1340 AGGTTTTTTATGAACACTGGAACTTGTAAATATGGTGATGATTGCAAATACAGTCATCC- 1398
Query 862 GGA-GTAAGGATT-TCACAACCACCACCAAGTCT-TATAAACCCTTTTGTTCTTCCAGCG 918
| | | ||| ||| | |||| ||||||||| ||| | | |||||| |||||||||||||
Sbjct 1399 GAAAGAAAG-ATTGTTACAATCACCACCAACTCTCT-TGAACCCTATTGTTCTTCCAGCA 1456
Query 919 AGACCTGGACAACCAGCTTGTGGTAACTTCA-GGTCTTATGGATTCTGCAAGTTCGGAAC 977
||||| ||||| ||||| ||||||||||||| || || | ||||| |||||||| ||| |
Sbjct 1457 AGACCAGGACAGCCAGCATGTGGTAACTTCAAGGCCT-ACGGATTTTGCAAGTTTGGAGC 1515
Query 978 AAACTGCAAATTCGACCACCCGATGCTGCCA-----T-AT--CA----GGGCCTGGCCAT 1025
|||||||||||| || ||| | ||||||| | | || || |||| |||||||
Sbjct 1516 AAACTGCAAATTTGATCACTCAATGCTGCTAAACCCTTATAACAATACGGGCTTGGCCAT 1575
Query 1026 AGCTTCTTCTCTGCCTACTCCTTATGCTT---C---ACCTGTTTCAACCCATCAGAGGAT 1079
| | |||||||||||||||||||| ||| | |||||||||||| || ||||||
Sbjct 1576 -G-T-CTTCTCTGCCTACTCCTTATCCTTATGCTCCACCTGTTTCAACTAATTTGAGGAT 1632
Query 1080 CTCACCATCGCCAAACCGCTCTGAT-TCGAAGT-CTCTTTCTAATGGTAAACCTGAC-G- 1135
|||| | | |||| || ||||||| | || | | || || ||||||||||| | | |
Sbjct 1633 CTCATCGCCACCAAGCCCCTCTGATAT-GAC-TACCCTATCCAATGGTAAACCCG-CTGC 1689
Query 1136 TGAAGAAGG--AAAGCTCAGAGACTGAGAAACCAGAC 1170
|| ||||| |||||| ||||||||||||| ||||
Sbjct 1690 TGCAGAAGCTCAAAGCTTGGAGACTGAGAAACAAGAC 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5