BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910203
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05250.1 | Symbols: | Peroxidase superfamily protein | chr1... 1182 0.0
AT1G05240.1 | Symbols: | Peroxidase superfamily protein | chr1... 1182 0.0
> AT1G05250.1 | Symbols: | Peroxidase superfamily protein | chr1:1525601-1527234
REVERSE LENGTH=1366
Length=1366
Score = 1182 bits (640), Expect = 0.0
Identities = 879/989 (89%), Gaps = 38/989 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAGCAAGAACCTTCTGGCCCTTGTGGTTCTTCTTAGCGTCCTTGGAGTTTCTGTT 60
||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 66 ATGGCGATCAAGAACATTCTCGCCCTTGTGGTTCTTCTTAGCGTGGTTGGAGTTTCTGTC 125
Query 61 GCCTA-TCCAAAGTTGATCCCT-ACCCTCGACTACTACCAGTCTAAGTGTCCCGACGCAG 118
||| | |||| ||||| | | | |||||||||||||| ||||||||||||| | ||||
Sbjct 126 GCC-ATTCCACAGTTG---CTTGA-CCTCGACTACTACCGGTCTAAGTGTCCCAAGGCAG 180
Query 119 AGCG-CATTGTTCGTCGTGTCACAGAACAATATGTTTCTCGGAAGCCAAGCCTTGCCGCT 177
|| | ||||||||| ||||||||| ||||||||||||||| || || ||||||||||
Sbjct 181 AG-GAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCGCCAGAAAACCCTTGCCGCT 239
Query 178 TCGCTTCTAAGGATGCATTTTCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTT 237
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTT 299
Query 238 CTGAAAACTCCAAAGAATGATGCGGAAAGAAACGCTATCCCCAACCTGACCCTGAGAGGC 297
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 300 CTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCCCAACCTGACCCTGAAAGG- 358
Query 298 TT-TGAAGTGGTGGATGCGGCCAAGACAGCGCTCGAGAAGAAGTGTCCCAATCTCGTTTC 356
|| |||||||||||||||||||||||||||||| |||| ||||||||| |||||| ||||
Sbjct 359 TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGAAGTGTCCTAATCTCATTTC 418
Query 357 TTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTCGCAGTGATCAAGGGACCATG 416
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 419 TTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGGCAGTGATCGGGGGACCATG 478
Query 417 GTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCAAAATTG-ACAGATGCATTGC 475
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 479 GTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGAAATTGAAC-GATGCATTGC 537
Query 476 AAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCGGACAAGG 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCCAACAAGG 597
Query 536 GTCTTAACGCTAAAGACCTTGTCGTTCTCTCAGGGGGTCACACCATTGGAATCTCCAGTT 595
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 598 GTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCACACCATTGGAATCTCTAGTT 657
Query 596 GCGCTCTCGTCAACACACGTATCTACAACTTCACAGGAAAGGGCGATTTTGACCCATCCA 655
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 658 GCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAGGGCGATTCTGACCCATCCA 717
Query 656 TGAACCCTAGCTACGTGAGGGCGTTGAAGAAGAA-GTGCA-GCCCTACAGATTTCA-AAT 712
||||||||||||||||||||| ||||||| ||| |||| ||| ||||||||||| ||
Sbjct 718 TGAACCCTAGCTACGTGAGGGAATTGAAGA-GAAAGTGCCCGCC-TACAGATTTCAGAA- 774
Query 713 CCGT-ACTGGAA-ATGGACCCAGGCAGTGCCAAGAAATTCGACCCTCACTACTTCACTGC 770
|| | |||| || ||||||||||||||||| || ||||||| |||||||||||| |
Sbjct 775 CC-TCACTG-AACATGGACCCAGGCAGTGCGTTGACATTCGACACTCACTACTTCAAGGT 832
Query 771 CGTGGCTCAGAAGAAAGGTCTCTTCATATCTGACTCTACCCTTCTCGATGACCTTGAGAC 830
|||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||
Sbjct 833 CGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGCTTCTCGATGACATTGAGAC 892
Query 831 CAAACTCTACGTCCAGAC-C-G-CTAA-CGA------G-GTTA-CTT-T--CAATAAAGA 875
|||| |||||| ||||| | | | | | | ||| ||| | |||||||||
Sbjct 893 CAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGTTTTCTTCTTTCAATAAAGA 952
Query 876 TTTCTCCGATTCCATGGTCAAACTTGGTAAAGTCCAAATTCTTACCGGGAAAAATGGTGA 935
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 953 TTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTCTTACCGGCAAAAATGGTGA 1012
Query 936 GATCAGGAAGAGATGCGCCTTCCCTAACT 964
|||||||||||||||||||||||||||||
Sbjct 1013 GATCAGGAAGAGATGCGCCTTCCCTAACT 1041
> AT1G05240.1 | Symbols: | Peroxidase superfamily protein | chr1:1521137-1522681
FORWARD LENGTH=1277
Length=1277
Score = 1182 bits (640), Expect = 0.0
Identities = 879/989 (89%), Gaps = 38/989 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAGCAAGAACCTTCTGGCCCTTGTGGTTCTTCTTAGCGTCCTTGGAGTTTCTGTT 60
||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 66 ATGGCGATCAAGAACATTCTCGCCCTTGTGGTTCTTCTTAGCGTGGTTGGAGTTTCTGTC 125
Query 61 GCCTA-TCCAAAGTTGATCCCT-ACCCTCGACTACTACCAGTCTAAGTGTCCCGACGCAG 118
||| | |||| ||||| | | | |||||||||||||| ||||||||||||| | ||||
Sbjct 126 GCC-ATTCCACAGTTG---CTTGA-CCTCGACTACTACCGGTCTAAGTGTCCCAAGGCAG 180
Query 119 AGCG-CATTGTTCGTCGTGTCACAGAACAATATGTTTCTCGGAAGCCAAGCCTTGCCGCT 177
|| | ||||||||| ||||||||| ||||||||||||||| || || ||||||||||
Sbjct 181 AG-GAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCGCCAGAAAACCCTTGCCGCT 239
Query 178 TCGCTTCTAAGGATGCATTTTCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTT 237
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTT 299
Query 238 CTGAAAACTCCAAAGAATGATGCGGAAAGAAACGCTATCCCCAACCTGACCCTGAGAGGC 297
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 300 CTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCCCAACCTGACCCTGAAAGG- 358
Query 298 TT-TGAAGTGGTGGATGCGGCCAAGACAGCGCTCGAGAAGAAGTGTCCCAATCTCGTTTC 356
|| |||||||||||||||||||||||||||||| |||| ||||||||| |||||| ||||
Sbjct 359 TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGAAGTGTCCTAATCTCATTTC 418
Query 357 TTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTCGCAGTGATCAAGGGACCATG 416
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 419 TTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGGCAGTGATCGGGGGACCATG 478
Query 417 GTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCAAAATTG-ACAGATGCATTGC 475
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 479 GTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGAAATTGAAC-GATGCATTGC 537
Query 476 AAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCGGACAAGG 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCCAACAAGG 597
Query 536 GTCTTAACGCTAAAGACCTTGTCGTTCTCTCAGGGGGTCACACCATTGGAATCTCCAGTT 595
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 598 GTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCACACCATTGGAATCTCTAGTT 657
Query 596 GCGCTCTCGTCAACACACGTATCTACAACTTCACAGGAAAGGGCGATTTTGACCCATCCA 655
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 658 GCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAGGGCGATTCTGACCCATCCA 717
Query 656 TGAACCCTAGCTACGTGAGGGCGTTGAAGAAGAA-GTGCA-GCCCTACAGATTTCA-AAT 712
||||||||||||||||||||| ||||||| ||| |||| ||| ||||||||||| ||
Sbjct 718 TGAACCCTAGCTACGTGAGGGAATTGAAGA-GAAAGTGCCCGCC-TACAGATTTCAGAA- 774
Query 713 CCGT-ACTGGAA-ATGGACCCAGGCAGTGCCAAGAAATTCGACCCTCACTACTTCACTGC 770
|| | |||| || ||||||||||||||||| || ||||||| |||||||||||| |
Sbjct 775 CC-TCACTG-AACATGGACCCAGGCAGTGCGTTGACATTCGACACTCACTACTTCAAGGT 832
Query 771 CGTGGCTCAGAAGAAAGGTCTCTTCATATCTGACTCTACCCTTCTCGATGACCTTGAGAC 830
|||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||
Sbjct 833 CGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGCTTCTCGATGACATTGAGAC 892
Query 831 CAAACTCTACGTCCAGAC-C-G-CTAA-CGA------G-GTTA-CTT-T--CAATAAAGA 875
|||| |||||| ||||| | | | | | | ||| ||| | |||||||||
Sbjct 893 CAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGTTTTCTTCTTTCAATAAAGA 952
Query 876 TTTCTCCGATTCCATGGTCAAACTTGGTAAAGTCCAAATTCTTACCGGGAAAAATGGTGA 935
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 953 TTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTCTTACCGGCAAAAATGGTGA 1012
Query 936 GATCAGGAAGAGATGCGCCTTCCCTAACT 964
|||||||||||||||||||||||||||||
Sbjct 1013 GATCAGGAAGAGATGCGCCTTCCCTAACT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5