BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910212
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05310.1 | Symbols: | Pectin lyase-like superfamily protein... 1677 0.0
> AT1G05310.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1550543-1552517 REVERSE LENGTH=1337
Length=1337
Score = 1677 bits (908), Expect = 0.0
Identities = 1030/1090 (94%), Gaps = 3/1090 (0%)
Strand=Plus/Plus
Query 126 TGGtatcaaatcaatatcatattcagtcaaaaaatccttttatggtcaccatcatcatca 185
|||||||||| |||||||||||||| |||| |||||||| | || ||||||||| |||||
Sbjct 176 TGGTATCAAAGCAATATCATATTCATTCAAGAAATCCTTATGTGATCACCATCACCATCA 235
Query 186 tcatcataatcatcatcatcacca---tcatAGACCTTCGGATACCaaaaaaaaGGTATC 242
||||||| |||||||||| ||||| |||| ||||||||||||||||| |||||||||
Sbjct 236 TCATCATCATCATCATCACCACCACCGGCATAAACCTTCGGATACCAAAAGAAAGGTATC 295
Query 243 AATATGCGACGATTTCCCTAAAAATATACCTCCATTGGACACCGACACAACGTCCTATCT 302
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 296 AATATGCGACGATTTCCCTAAAAATATACCTCCATTGGACACCGACACAACATCCTATCT 355
Query 303 CTGCGTGGATAAGAACGGTTGCTGCAATTTCACGACGGTGCAATCTGCCGTGGACGCAGT 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 CTGCGTGGATAAGAACGGTTGCTGCAATTTCACGACGGTGCAATCGGCCGTGGACGCAGT 415
Query 363 GGGGAATTTTAGTCAGAGAAGGAACGTGATTTGGATCAATTCCGGCATGTACTATGAAAA 422
||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 416 GGGGAATTTCAGTCAAAGAAGGAACGTGATTTGGATAAACTCCGGCATGTACTATGAAAA 475
Query 423 AGTGGTGATTCCGAAGACTAAACCAAACATAACGTTGCAAGGACAAGGGTTCGAGACTAC 482
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 476 AGTGGTGATTCCGAAGACTAAACCAAACATAACGTTGCAAGGACAAGGCTTCGACATTAC 535
Query 483 GGCCATAGCATGGAACGACACGGCCTACTCAGCTAATGGCACATTTTACTGTGCCTCGGT 542
||||| || ||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 536 AGCCATTGCGTGGAACGACACTGCCTACTCAGCTAATGGCACATTTTATTGTGCCACGGT 595
Query 543 CCAAGTCTTCGGTTCTCAGTTCGTTGCGAAGAACATTAGTTTCATGAACGTGGCTCCGAT 602
||||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 596 CCAAGTCTTTGGTTCTCAGTTCGTCGCTAAGAACATCAGTTTCATGAACGTGGCACCGAT 655
Query 603 ACCAAAGCCAGGAGACGTAGGAGCTCAGGCGGTGGCGATAAGAATTGCCGGAGATGAATC 662
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 656 ACCAAAGCCAGGAGACGTAGGAGCTCAGGCGGTGGCAATAAGAATCGCCGGAGATGAATC 715
Query 663 AGCGTTTGTAGGATGCGGTTTCTTCGGAGCTCAAGACACTCTTCATGACGATAGAGGTCG 722
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 AGCGTTTGTGGGATGCGGTTTCTTCGGAGCACAAGACACTCTTCATGACGATAGAGGTCG 775
Query 723 TCATTACTTCAAAGATTGTTACATTCAAGGCTCCATTGATTTCATCTTCGGCAACGCTAA 782
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 776 TCATTACTTCAAGGATTGTTACATTCAAGGATCCATTGATTTCATCTTCGGCAACGCTAA 835
Query 783 ATCTCTCTATCAGGACTGTCGAATAATATCAATGGCTAATCAAGTGAGCCCAGGGTCAAA 842
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 836 GTCTCTCTATCAGGACTGTCGAATAATATCAATGGCTAATCAATTGAGCCCAGGTTCAAA 895
Query 843 AGCGGTTAACGGAGCCGTGACTGCAAACGGGCGTAGCTCCAAGGACGAGAATAGTGGCTT 902
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 896 AGCAGTTAACGGAGCCGTGACTGCAAATGGGCGTAGCTCCAAGGACGAGAACAGTGGCTT 955
Query 903 CTCCTTCGTCAACTGCACAATCGGTGGCACCGGTCACGTGTGGCTCGGTCGTGCATGGCG 962
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 956 CTCCTTCGTCAACTGCACAATCGGTGGAACTGGTCACGTGTGGCTAGGTCGTGCATGGCG 1015
Query 963 GCCTTACTCACGTGTGGTCTTCGTTTCCACTACCATGACCGATGTTATCGCACCCGAAGG 1022
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1016 GCCTTACTCACGTGTGGTTTTCGTTTCCACTACTATGACCGATGTTATCGCACCCGAAGG 1075
Query 1023 CTGGAACAATTTCAACGATCCCTCTAGGGACGCGACTATATTTTATGGAGAGTATAATTG 1082
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CTGGAACAACTTCAACGATCCCTCTAGGGACGCGACTATATTTTATGGAGAGTATAATTG 1135
Query 1083 TTCGGGTCCAGGAGCCGATATGTCAAAGAGGGCAGCATATGTGCAGAAGCTTAATGAGAC 1142
||||||||||||||| |||||||||||||| ||| ||||||| || || |||||||||||
Sbjct 1136 TTCGGGTCCAGGAGCAGATATGTCAAAGAGAGCACCATATGTTCAAAAACTTAATGAGAC 1195
Query 1143 TCAAGTTGCTCTATTAATTAACACGTCTTATATTGATGGAGATCAATGGTTACAGTTTTC 1202
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1196 TCAAGTTGCTCTATTAATTAACACGTCTTTTATTGATGGAGATCAATGGTTACAGTTTTC 1255
Query 1203 TGACCTTTAA 1212
||||||||||
Sbjct 1256 TGACCTTTAA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5