BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910236
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51330.1 | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858706-208... 326 1e-88
> AT5G51330.1 | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858706-20861711
REVERSE LENGTH=1997
Length=1997
Score = 326 bits (176), Expect = 1e-88
Identities = 204/218 (94%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 47 TGGTGGGCAAAATCACGGTGACCGATGTTTCTCTCCGATACCCAAGCATGTTTTCACTCC 106
||||| |||||||||||| || || || |||||||| ||||||||||||||||||||||
Sbjct 219 TGGTGAGCAAAATCACGGCGAGTGACGTGTCTCTCCGGTACCCAAGCATGTTTTCACTCC 278
Query 107 GATCGCGTTTCGATTACAGCAGGATGAACCGGAATAAACCGTTGAAGAAGAGGAGCGGTG 166
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 279 GATCGCATTTCGATTACAGTAGGATGAACCGGAATAAACCGATGAAGAAGAGGAGTGGTG 338
Query 167 GTGGTCTTCTTCCTGTTTTTGACGAGAGTCATGTGATGGCTTCGGAGCTAGCTGGAGACT 226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GTGGTCTTCTTCCTGTTTTCGACGAGAGTCATGTGATGGCTTCGGAGCTAGCTGGAGACT 398
Query 227 TGCTTTACAGAAGAATCACACCTCATGAAATTTCTATG 264
||||||||||||||||| ||||||||||| ||||||||
Sbjct 399 TGCTTTACAGAAGAATCGCACCTCATGAACTTTCTATG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5