BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910245

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G05615.1 | Symbols:  | Domain of unknown function (DUF313)  ...   632    0.0  


> AT1G05615.1 | Symbols:  | Domain of unknown function (DUF313) 
 | chr1:1677507-1678270 REVERSE LENGTH=519
Length=519

 Score =  632 bits (342),  Expect = 0.0
 Identities = 463/521 (89%), Gaps = 9/521 (2%)
 Strand=Plus/Plus

Query  1    ATGGGTAG-TATTCATG-TGGAGCCACTCACTGCCTGTGGAGACGAAACAGAGTGTTATG  58
            |||||| | |||||||| | |||||| |||||||||||||||||||||||||||||| ||
Sbjct  1    ATGGGT-GCTATTCATGAT-GAGCCATTCACTGCCTGTGGAGACGAAACAGAGTGTTTTG  58

Query  59   GAGGCAATAGAGAGGGAAGACAGAGTTTTCATTCAATTTCCACGAAAGAAGAGAACCTTG  118
            ||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||
Sbjct  59   GAGGCAATAGAGAGGGAAGCCAGAGTTTTCATTCAAGTTCCACTAAGGAAGAGAACCTTG  118

Query  119  AGGATTCCTATCTCTACTCCTTCTTATACTACTGCACTAGGAGCCTCTTCTTCTGGAACG  178
            ||||||||||||||||  || |  |  || |  | | || |||| ||||||||||| |||
Sbjct  119  AGGATTCCTATCTCTA--CC-TAGTGCACCAGAGGAGTATGAGCATCTTCTTCTGGGACG  175

Query  179  AGAGAGCCGACGCCGCAGTGGCTGGTGAGGTTGATGAGGGCAAAATCAAAGATTTTGATT  238
            |||||||| || ||| ||||||||||| |||||||||||| ||||||| ||||||||| |
Sbjct  176  AGAGAGCCAACACCGGAGTGGCTGGTGCGGTTGATGAGGGTAAAATCATAGATTTTGAAT  235

Query  239  TCTTGAGCCCCG-CTGAAAAAAGGATCATAGAAGAACATGCCAATAATGAACGTGAAGAA  297
            |||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  236  TCTTGAACCCCGAC-GAAAAAAGGATCATAGAAGAACATGCCAATAAGGAACGTGAAGAA  294

Query  298  GGAGTAGACGTGATACTCGTGGCTTCTGATCTAAGGGAATTTAAGTTGAATTTGAGGAGA  357
            ||||||||||||||||||||   || ||||| |||||||| || ||||||||||||||||
Sbjct  295  GGAGTAGACGTGATACTCGTAAATTTTGATCGAAGGGAATATATGTTGAATTTGAGGAGA  354

Query  358  TGGGTCATGGGGACCTCTCCTCTATACATTTTGGTTTCAGGGTGGAATAAGGTGGTCAAA  417
            |||  ||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct  355  TGGAACATGGGGACCTCTCCTCTATACATTTTGGTTTCAGGGCGGTATAATGTGGTCAAA  414

Query  418  GAATGCCGTCTAGAGGAAGGTAATAAGATTCGCCTCTGGTCTTTCCACGTTAATGACCAG  477
            | |||||||||| ||||||| ||| |||||||| |||||||||||||| || ||||||||
Sbjct  415  GGATGCCGTCTAAAGGAAGGCAATGAGATTCGCATCTGGTCTTTCCACTTTGATGACCAG  474

Query  478  CTCTATATCGCTATGGTTCCTCTTTCGCCAACTGAGTCCGG  518
            ||| || ||||||||||||||||| ||||||||||||||||
Sbjct  475  CTCAATCTCGCTATGGTTCCTCTTACGCCAACTGAGTCCGG  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5