BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910280
Length=4905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05960.2 | Symbols: | ARM repeat superfamily protein | chr1... 4084 0.0
AT1G05950.1 | Symbols: | unknown protein; Has 50 Blast hits to... 2811 0.0
> AT1G05960.2 | Symbols: | ARM repeat superfamily protein | chr1:1807973-1815465
REVERSE LENGTH=3685
Length=3685
Score = 4084 bits (2211), Expect = 0.0
Identities = 2488/2615 (95%), Gaps = 45/2615 (2%)
Strand=Plus/Plus
Query 326 TGCCTCTATTTTCGTGTAGTTTACTAAGCATTGTCCGAACTCTTTTGGAGCAAACAAGAG 385
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 557 TGCCTCTTTTTTCGTGTAGTTTGCTAAGCATTGTCAGAACTCTTTTGGAGCAAACAAAAG 616
Query 386 AGGAAGAAGTTCAGATCTTGGGTTGCAATACGCTTGTTGACTTTATAAGTTTACAGACTG 445
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 617 AGGAAGAAGTTCAGATCTTGGGTTGCAATACTCTTGTCGACTTTATAAGTTTACAGACTG 676
Query 446 TGAATTCGCACATGTTCAACTTAGAAGGTCTAATCCCTAAACTTTGTCAACTTGCTCAAG 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGAATTCGCACATGTTCAACTTAGAAGGTCTAATCCCTAAACTTTGTCAACTTGCTCAAG 736
Query 506 AAATGGGGGATGATGAAAGATCACTCCGATTACGCTCAGCAGGAATGCAGGCTTTGGCGT 565
||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 737 AAATGGGTGATGATGAAAGATCACTCCAATTACGGTCAGCAGGAATGCAGGCTTTGGCAT 796
Query 566 TCATGGTATCTTTCATTGGTGAGCATTCCCAACTATCAATGGACTTGGATATGATTATTT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TCATGGTATCTTTCATTGGTGAGCATTCCCAACTATCAATGGACTTGGATATGATTATTT 856
Query 626 CTGTGATTCTGGAGAATTATATGGATTTGGAGAAGGGCCAAGAAGATACCAAAGACA-TT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 857 CTGTGATTCTGGAGAATTATATGGATTTGGAGAAGGGCCAAGAAGATACCAAAGA-AGTT 915
Query 685 GATCAAAATTCAGAAACGATGATTCCCAACATGACTAAAAAGGTTTCTTTCAAACCTAAT 744
||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GATCAAATTTCAGATACGAAGATTCCCAACATGACTAAAAAGGTTTCTTTCAAACCTAAT 975
Query 745 CCGGTGACCGACTATAAGTTGGAAAACATGGATATTTCGAAGAGCCCCTCATACTGGTCT 804
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CCGGTGACTGACTATAAGTTGGAAAACATGGATATTTCGAAGAGCCCCTCATACTGGTCT 1035
Query 805 ATGGTTTGCCTTTGCAATATAGCCAAATTAGCAAAGGAAACTACAACTGTTCGTCGGGTT 864
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1036 ATGGTTTGCCTTTGCAATATAGCCAAATTAGCAAAGGAAACTACCACTGTTCGTCGGGTT 1095
Query 865 TTGGAACCGCTTCTGACTGCTTTTGACAGTGGAGATTACTGGTCTCCCCAGAAGGGCGTT 924
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1096 TTGGAACCGCTTCTGACTGCTTTTGACAGTGGAGATTACTGGTCTCCTCAGAAGGGCGTT 1155
Query 925 GCCTCTTCTGTTTTATTGTTTCTGCAGTCTCGTCTGGAAGAATCAGGAGAAAATTGTCAT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GCCTCTTCTGTTTTATTGTTTCTGCAGTCTCGTCTGGAAGAATCAGGAGAAAATTGTCAT 1215
Query 985 GTGTTGGTATCTTCTTTGATCAAGCACTTGGATCATAAGAATGTTATGAAGCAACAAGGT 1044
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1216 GTGTTGGTATCTTCTTTGATCAAGCACTTGGATCATAAGAATGTAATAAAGCAACAAGGT 1275
Query 1045 CTTCAAGTTAACATGGTCAATGTAGCCACATGCCTTGTGCTACATGCTAAGCAGCAGGCT 1104
|||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1276 CTTCAAATTAACATGGTCAATGTAGCCACATGCCTTGCACTACATGCAAAGCAGCAGGCT 1335
Query 1105 TCAGGCGCGATGACTGCTGTAATAGCTGACTTGATTAAGCACTTGCGAAAATGCCTGCAA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TCAGGCGCGATGACTGCTGTAATAGCTGACTTGATTAAGCACTTGCGAAAATGCCTGCAA 1395
Query 1165 AATGCAGCTGAATCAGATGTGTGTGT-GAATGAAACACAGCAGAACTCGGACCTCCAGCA 1223
|||||||||||||||||||||| ||| || | ||||| ||||||||||||||||||||||
Sbjct 1396 AATGCAGCTGAATCAGATGTGTCTGTTGA-TAAAACAAAGCAGAACTCGGACCTCCAGCA 1454
Query 1224 TGCATTAGAAAATTGCATTGCAGAGCTCTCAAATAAGGTTGGGGATGCAGGGCCCATTCT 1283
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 TGCATTAGAAAATTGCATAGCAGAGCTCTCAAATAAGGTTGGGGATGCAGGGCCCATTCT 1514
Query 1284 TGATATGTTGGCAGTGGTTCTTGAGACAATATCCACTAATGTAGTCCTTTCTAGGACCAC 1343
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1515 TGATATGTTCGCAGTGGTTCTTGAGACAATTTCCACTAATGTAGTCCTTTCTAGGACCAC 1574
Query 1344 AGCATCAGCCGTTCTCCGAGCTGCACATATAGTATCGGTGGTCCCAAATGTTTCTTACCA 1403
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 AGCATCAGCCATTCTCCGAGCTGCACATATAGTATCGGTGGTCCCAAATGTTTCTTACCA 1634
Query 1404 CAAGAAAGTATTTCCGGATGCCTTGTTTCACCAACTGCTCCTTGCAATGTCCCATGCAGA 1463
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1635 CAAGAAAGTATTTCCGGATGCCTTGTTTCACCAACTGCTCCTTGCGATGTCCCATGCAGA 1694
Query 1464 TTGTAAGACTAGAGTCGAGGCACACAATATTTTATCCGTCGTGCTTCTTCGAACTCTTCG 1523
||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1695 TTGTACGACTAGAGTCGAGGCACACAATATTTTTTCCGTCGTGCTTCTTGGAACTCTTCG 1754
Query 1524 TTTGCCTTGGTCAGATCAACATAAGGAAACCTCAGAAGTTGTTCCTGGGACATTGTCAGT 1583
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 1755 TTTGCCTTGGTCAGATCAACATAAGGAAACCTCAGAAGCTGTTTCTGGGTCATTGTCAGT 1814
Query 1584 TGATGGAATTTGTACAGTAAGAAACCAGAGTACTAGTTTACAGGAGGAAGAGAAAGAAAA 1643
||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1815 TGATGGAATTTGTACAGTAAG------GA--AC-------CAGGAGGAAGAGAAAGAAAA 1859
Query 1644 AGTTGAGAAATCCTTAAACAGTGAACTGCGTAAAGATGTAAACCACATATCTTATCCAAG 1703
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1860 AGTTGAGAAATCCTTAAACAGTGAACTGTGTAAAGATGTAAACCACATATCTCGTCCAAG 1919
Query 1704 TGTATCACGACATACCAGTCAACAGCTTAG-TGGTCAGTCCTTGGATAGTTTAAAGGATT 1762
||||||| |||| ||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 1920 TGTATCAGGACAGACCAGTCAACAGCTTAGCTG-TCAGTCCTTGGATAGCTTAAAGGATT 1978
Query 1763 TAGATGATGGTATAAAGTCGTTATGTTCACTCCGACTGAGTAGTCACCAAGTGAATATGC 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TAGATGATGGTATAAAGTCGTTATGTTCACTCCGACTGAGTAGTCACCAAGTGAATATGC 2038
Query 1823 TTCTTTCATCCCTATGGATCCAAGCAACTTCTACCGACAATACCCCTGAAAATTTTGAGG 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 TTCTTTCATCCCTATGGATCCAAGCAACTTCTACCGACAATACCCCTGAAAATTTTGAGG 2098
Query 1883 CCATGGCCAGCACATATCAAATCACTTTACTGTTTTCACTAGCAAAGAGATCAAATCACA 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 CCATGGCCAGCACATATCAAATCACTTTACTGTTTTCACTAGCAAAGAGATCAAATCACA 2158
Query 1943 TGGCTCTGGTGCGGTGTTTTCAGCTGGCATTCTCTCTTCGAAATCTCTCATTGAATCAAG 2002
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 TGGCTCTGGTGCAGTGTTTTCAGCTGGCATTCTCTCTTCGAAATCTCTCATTGAATCAAG 2218
Query 2003 ATGATTTCTGGTATAATGTTGAAGGAGGTATGCAGCACTCTCGTAGAAGATCTATCTTCA 2062
||| | | | | ||||||||||||||||||||||||||||||||
Sbjct 2219 ATG------G--A----G--G-------TATGCAGCACTCTCGTAGAAGATCTATCTTCA 2257
Query 2063 CTTTTGCATCATATATGCTCATTTTCGGTGCCAAGATTTCAAATATTCTGGAGCTAGTTC 2122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2258 CTTTTGCATCATATATGCTCATTTTCGGTGCCAAGATTTCCAATATTCTGGAGCTAGTTC 2317
Query 2123 CAATTGTTAAAGAATCTTTGACAGCCCAAATGGTTGATCCTTATCTTGTGCTGGAAGGAG 2182
||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2318 CAATTATCAAAGAATCTTTAACTGCCCAAATGGTTGATCCTTATCTTGTGCTGGAAGGAG 2377
Query 2183 ATATCAGACTGCGTGCTGTATGTTCTGGATTTCCACAGGAAGAAGCGTATGGATCTGACA 2242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2378 ATATCAGACTGCGTGCTGTATGTTCTGGATTTCCACAGGAAGAAACGTATGGATCTGACA 2437
Query 2243 AAGATGATAATGCTGCTCTCAATTCTTCAGTGATTATTGCAGATGATAGACGTCTGAAGG 2302
||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 2438 AAGATGATAGTGCTGCTCTCAATTCTTCAGTGATTGTCACAGATGATAGACGCCTGAAGG 2497
Query 2303 AGATCGTAATTACTCATTTTACATCGAAATTTCAGACATTATCCGAGGAGGAGCAATCAA 2362
| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 2498 AAATCGTGATAACTCATTTTACATCGAAATTGCAGACATTATCTGAGGAGGAGCAATTAA 2557
Query 2363 ATTTGAGAAAGGAAATTCAGTCAGATTTTTCCCGAGATGATACACATCCGCTTGGTGGAA 2422
||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 2558 ATTTGAGAAAGGAAATTCAGTCAGATTTTTCCCTAGATGATGCACATTCGCTTGGTGGAC 2617
Query 2423 AATTGTTTACGGATACACCAGGACCTAGTTCTCCTCTTAATCAAACAGAACTCCCAGCTT 2482
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2618 AATTATTCACGGATACACCAGGACCTAGTTCTCCTCTTAATCAAACAGAACTTCCAGCTT 2677
Query 2483 TCGAAGAGGTTGAGCTTTCAGACATAGTGGCATTTGAAGGAATTTCCCCAGGGGCTAGTG 2542
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct 2678 TTGAAGAGGTTGAGCTTTCAGACATAGCGGCATTTGAAGGAATATCCCCAGGGGCCAGTG 2737
Query 2543 GAAGTCAGTCTGGGCACAGAACATCATTGTCCACAAACACTAATCCAGTAGATGTTCTGA 2602
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2738 GGAGTCAGTCTGGCCACAGAACATCATTGTCCACAAACACTAACCCAGTAGATGTTCTGA 2797
Query 2603 GTGTCAACGAGTTGTTAGAATCGGTATCAGAAACTGCTCGGCAAGTTGCAAGTCTCCCTG 2662
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2798 GTGTCAATGAGTTGTTAGAATCGGTATCAGAAACTGCTCGGCAAGTTGCAAGTCTCCCTG 2857
Query 2663 TTTCCTCCGTTCCTGTACCTTATGACCAAATGATGAACCAGTGCGAAGCTCTTGTGACGG 2722
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2858 TTTCCTCCATTCCTGTACCTTATGACCAAATGATGAACCAGTGTGAAGCTCTTGTGACGG 2917
Query 2723 GTAAGCAGCAAAAGATGTCTGTGCTTCGAAGTTTCAAACCCCAAGCAACCAAAGCTATAA 2782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2918 GTAAGCAGCAAAAGATGTCTGTGCTTCGAAGTTTCAAACCCCAAGCAACCAAAGCTATAA 2977
Query 2783 CCTTGTCAGAAGACGATGAAAAGGACGAACAATATCTTCTCAAGGAGACAGAAGAAGCTG 2842
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2978 CCT---CAGAAGACAATGAAAAGGACGAACAATATCTTCTCAAGGAGACAGAAGAAGCTG 3034
Query 2843 GTGAAGATGATCAGAAGGCAATAATTGTGGCTGATGTTCAATCTCAAGGGCAGCTCGGAT 2902
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 3035 GTGAAGATGATGAGAAGGCAATAATTGTGGCTGATGTTCAACCTCAAGGCCAGCTTGGAT 3094
Query 2903 TCTTCTCACAAGAAGTTCCACAAAATTCATTTCGG 2937
|||||||||||||||||||||||||||||||||||
Sbjct 3095 TCTTCTCACAAGAAGTTCCACAAAATTCATTTCGG 3129
Score = 564 bits (305), Expect = 3e-159
Identities = 319/326 (98%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 1 ATGGGGGTTATGTCCAGACGGGTTTTGCCCGCCTGTGGTAACCTCTGTTTCTTCTGTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 ATGGGGGTTATGTCCAGACGGGTTTTGCCCGCCTGTGGTAACCTCTGTTTCTTCTGTCCT 228
Query 61 TCTTTGAGGGCAAGGTCTAGGCATCCCGTTAAACGCTACAAGAAAATGCTCGCTGAAATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TCTTTGAGGGCAAGGTCTAGGCATCCCGTTAAACGCTACAAGAAAATGCTCGCTGAAATC 288
Query 121 TTCCCTCGTAATCAGGAAGCTGAGCCCAATGATAGAAAAATTGGCAAGCTTTGCGAGTAT 180
|||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||
Sbjct 289 TTCCCTCGTAATCAGGAAGCTGAGCCTAATGATAGAAAAATCGGCAAGCTGTGTGAGTAT 348
Query 181 GCGTCTAGGAATCCTTTACGAATTCCAAAGATTACAGAGTACCTTGAGCAAAAATGTTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GCGTCTAGGAATCCTTTACGAATTCCAAAGATTACAGAGTACCTTGAGCAAAAATGTTAC 408
Query 241 AAAGAACTGCGAAATGGAAATATTGGATCAGTTAAAGTCGTCTTATGCATTTATAAGAAA 300
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 409 AAAGAATTGCGAAATGGAAATATTGGTTCAGTGAAAGTCGTCTTATGCATTTATAAGAAA 468
Query 301 CTGCTTTCATCATGTAAGGAGCAGAT 326
||||||||||||||||||||||||||
Sbjct 469 CTGCTTTCATCATGTAAGGAGCAGAT 494
> AT1G05950.1 | Symbols: | unknown protein; Has 50 Blast hits
to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa
- 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes
- 7 (source: NCBI BLink). | chr1:1804401-1807471 REVERSE
LENGTH=2056
Length=2056
Score = 2811 bits (1522), Expect = 0.0
Identities = 1778/1900 (94%), Gaps = 23/1900 (1%)
Strand=Plus/Plus
Query 3013 ATGGAGGAGGTGA-ATTGTAGTTTACCAGTCACGAAGACCACCACCACTATGGTTTCTTG 3071
|||||||| || | |||| |||||||||||||||||| ||||| || ||||||
Sbjct 1 ATGGAGGAAGT-AGATTGCAGTTTACCAGTCACGAAG------ACCAC---GGATTCTTG 50
Query 3072 TCCGACAGAGGACGCCATTCGAGCTTTATTAGAAAGCTTAGTCGACCCTCTGCTTCCATC 3131
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 51 TCCGACAGAGGACGCCATTCGAGCTTTATTAGAAAGCTTAGTCGACCCTTTGCTTCCATC 110
Query 3132 AAAACCAACTGATGATGTTCCTTCGAAATCTGTCCGGGAATCTGTTGCCAAACAGGTTCA 3191
|||||||||||||||| ||||||| | ||| |||| |||||||||||||||||||||||
Sbjct 111 AAAACCAACTGATGATCTTCCTTCCACTTCTATCCGTGAATCTGTTGCCAAACAGGTTCA 170
Query 3192 TGCTCTTGTGTTGCTCTACAATTATTACCACAGAAAAGACAATCCTCATCTGGAATGTTT 3251
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 171 TGCTGTTGTGTTGCTCTACAACTATTACCACAGAAAAGACAATCCTCATCTTGAATGTTT 230
Query 3252 GTCCTTTGAGTCTTTCCGTAGCTTAGCTACGGTTATGAGGCCTGCTCTGCTCCAGCATTT 3311
||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 231 GTCTTTTGAGTCTTTCCGTAGCTTAGCTACTGTTATGAAGCCTGCTCTGCTCCAGCATTT 290
Query 3312 GAAGGAAGA---TGGTGATTCAGGACAAACCGTATTGCTGGAGAAGGTTATTGTGGATGC 3368
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAAGGAAGATGGTGGTGTTTCAGGACAAACCGTATTGCTGGAGAAGGTTATTGTGGATGC 350
Query 3369 ATGTAGCTTGTCAATGAGCTTAGATGCGTCTTCGGATCTTTTTATCTTGAACAAGTATCC 3428
|||||| || || |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 351 ATGTAGTTTATCCATGAGCTTAGATGCGTCTTCAGATCTTTTTATCTTGAACAAGTGTCC 410
Query 3429 CATAAGGAAAGTTGCTGTTCTGCTT-GTTGACTCAGAGAAGAAGAATTGTTATCTTCAAC 3487
|||||||| |||||| |||||| || ||||||||||||||||||| ||| ||||||||||
Sbjct 411 CATAAGGAGAGTTGCAGTTCTG-TTGGTTGACTCAGAGAAGAAGAGTTGCTATCTTCAAC 469
Query 3488 ACAGTTCCATCACACAAGGTGTCTGGTCACTACTTGAAAAACCCATTGAAAAAGAGAAAA 3547
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 470 ACAGTTCCATCACACAAGGTGTCTGGTCTCTACTTGAGAAACCCATTGAAAAGGAGAAAG 529
Query 3548 CTGCTAGGGAGAATCAGAAAGAAGAGGTCGTCTTTCAGAAAGTTGCATTTGCTGCTATTA 3607
| |||||||| |||||||||||||||| ||||||||| |||||||||||||||| | |||
Sbjct 530 CCGCTAGGGAAAATCAGAAAGAAGAGGGCGTCTTTCAAAAAGTTGCATTTGCTGTTGTTA 589
Query 3608 AGGAGGCCACAGGTGTTAATCACAAGGACATTGAGATCTTGGAGAGGCATTTGGTATGCT 3667
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 590 AGGAGGCCACAGGTGTTAATCACAAGGACATTGTGATCTTGGAGAGGCATTTGGTATGCT 649
Query 3668 CCTTGAGTGAAGAGAAGGCAGCAGTCCGCTTTTACATAATGAAGTGCTCTTCACAAGACA 3727
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 650 CCTTGAGTGAAGAGAAGACAGCAGTCCGCTTTTACATAATGAAGTGCACTTCACAAGACA 709
Query 3728 AATTTTCTGGAGAAAATCCTGTCGAAGAAGTGCTTAGTTGTATGCAGGGTCCTTTATTTG 3787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AATTTTCTGGAGAAAATCCTGTCGAAGAAGTGCTTAGTTGTATGCAGGGTCCTTTATTTG 769
Query 3788 AGAAGAGCTTCTCTGACTGGACTATGAATTCCATAGTGGAATACTTTCATGTTCTTCCAT 3847
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 AGAAGAGCTTTTCCGACTGGACTATGAATTCTATAGTGGAATACTTTCATGTTCTTCCAT 829
Query 3848 ATGCCAGTCTCATTGAGGATTGGTTTTCCAGGCGAGGAGATACTGAATCTGTGATAGAGA 3907
|||||| |||||| || |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 830 ATGCCACTCTCATAGAAGATTGGTTTTCCAGGCGAGGAGATACCGAATTTGTGATAGAGA 889
Query 3908 AAGAACCAGAATCTGTATGTGATGATATCGAAAGCAATGGCAAGGCT-GATGCAACGAAG 3966
||||||||||| ||||||||||||||||||||||||| ||| | | |||||||| |||
Sbjct 890 AAGAACCAGAAGCTGTATGTGATGATATCGAAAGCAA---CAAAG-TAGATGCAACCAAG 945
Query 3967 GAGTCGGAACTTTCCGACATTTTTAAAAGACGAGAAAATGCTGCTTTAAAAAGGAGATAT 4026
||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 946 GAGTCGGAAGTTTCCGACATTTTTGAAAGACGAGAAAAAGCTGCTTTAAAAAGGAGATAT 1005
Query 4027 GAAATTAAAGCCAAAAAAGTTGCTGCTCTACTTAGCAATCCTAGAGCTAGAGGAAAAGCT 4086
||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||
Sbjct 1006 GAAATTAAAGCCAAAAAAGTTGCCGCTCTACTGAGCCATCCTGGAGCTAGAGGAAAAGCT 1065
Query 4087 ACTCCGAGGTTACAAAATCGGTACTTAAAAGGAAGTACAAGTGTTGCGAAGGAACCTAAT 4146
|| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1066 ACGACGAGGTTGCAAAATCGGTACTTAAAAGGAAGTATGAGTGGTGCGAAGGAACCTAAT 1125
Query 4147 GTTCACTCGGAGACAGTATTTGCGTTGAATGCTAAGAATGTAGATAATAAAATGAGCCCT 4206
|||||||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||
Sbjct 1126 GTTCACTCGGAGACAGTAGTTGCGTTGAAGGCTAAGAATGTAGGTAATGAAATGAGCCCT 1185
Query 4207 TGTAAGGATAGCTATTCGAATGGAGAGAAAGGTGGTTTCGAGGTTGCGTCTGACCCAAAG 4266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGTAAGGATAACTATTCGAATGGAGAGAAAGGTGGTTTCGAGGTTGCGTCTGACCCAAAG 1245
Query 4267 GATCTCAAAGAAAGAGGTATCCAGAGGAAGAAAGCTGTTCCTGACAGACTTAATAGCATT 4326
|| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GAACTTAAAGAAAGAGGTCTCCAGAGGAAGAAAGCTGTTCCTGACAGACTTAATAGCATT 1305
Query 4327 CTTAAGCTTAATGCAACTCCTGTTTCTGCTCACAACGCTAATCTAAACCTTGAGGAGCTA 4386
| |||||||||| ||||||||| ||||||||| ||| |||||| ||| ||||||||||||
Sbjct 1306 CATAAGCTTAATTCAACTCCTGCTTCTGCTCATAACTCTAATCCAAATCTTGAGGAGCTA 1365
Query 4387 CAGACGTCTCTTCTTTCTAAAGCAACATCTCTATCCGAAACTGCACTGAAAGTTCTTCAT 4446
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1366 CAGACGTCTCTTCTTTCTAAAGCAACATCACTATCCGAAACTGCATTGAAAGTTCTTCTT 1425
Query 4447 TGCAAACGAGATAAACTGACTCGTCAACAGCGGAACATAGAAGACGAGATTGCTAAATGT 4506
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1426 TGCAAACGAGATAAACTGACTCGTCAACAGAGGAACATAGAAGACGAGATTGCTAAATGT 1485
Query 4507 GATAAATGCATCCAGAACATCAAAGGTGATTGGGAGCTGCAATTAGAAACAGTACTCGAG 4566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GATAAATGCATCCAGAACATCAAAGGTGATTGGGAGCTGCAATTAGAAACAGTACTCGAG 1545
Query 4567 TGCTGTAACGAGACATACCCAAGGCGTATGCTTCAAGAATCTCTTGACAAGTCAGCATGC 4626
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1546 TGCTGTAACGAGACATACCCGAGGCGTAACCTTCAAGAATCTCTTGACAAGTCAGCATGC 1605
Query 4627 CAAAGCAACAAGAGGCTGAAGCTCTGTGAAACACTTCCTACTACTAAAAGTCTGTGTCAG 4686
|||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1606 CAAAGCAACAAGAGGCTGAAGCTCAGTGAAACTCTTCCTTCTACTAAAAGTCTGTGTCAG 1665
Query 4687 AAACTCGATGATATCTGTCTCGTGAATAACTGGGTACTACCAAACTATCGTGTGTCTCCA 4746
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1666 AGACTCGATGATATCTGTCTCATGAATAACTGGGTACTACCAAACTATCGTGTGGCTCCA 1725
Query 4747 TCAGATGGTGGATATGAAGCTGAAGTAACAATCACGGGGAATCATGTCGCTTATACAATA 4806
|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 1726 TCAGATGGTGGATATGAAGCTGAAGTAAGAATCACGGGGAATCATGTCGCATGTACAATA 1785
Query 4807 CATGGAGAGGAAAAGTCTGATCCTGAGGAAGCTAGGGAATCTGCGGCAGATTGCTTGCTA 4866
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1786 CATGGAGAGGAAAAGTCTGATGCTGAGGAAGCTAGGGAATCTGCGGCAGCTTGCTTGCTA 1845
Query 4867 ACTAAGTTACAACAC-AGCACAACAGCCAACTTGTCATGA 4905
|| |||||||||||| | |||| |||||||||| ||||||
Sbjct 1846 ACAAAGTTACAACACGA-CACAGCAGCCAACTTATCATGA 1884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 244714347954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5