BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910284

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06010.1 | Symbols:  | unknown protein; Has 25 Blast hits to...   372    9e-103


> AT1G06010.1 | Symbols:  | unknown protein; Has 25 Blast hits 
to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:1822618-1823997 FORWARD LENGTH=633
Length=633

 Score =  372 bits (201),  Expect = 9e-103
 Identities = 227/239 (95%), Gaps = 3/239 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGAGAGAAGAGCCCTGGCTTGAAGATCCTCTGGATATGGACTATCGGCACTGCT  60
            ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct  70   ATGGGAAGAGAGAAGAGCCCTGGTTTGAAGATCCTCTGGGTATGGACTATCGGCACTGCT  129

Query  61   GCTATATTGGTGACGAGTGTTGTCCGCACGAGAATGCAGGATATGCAATCAATGATGAAC  120
            |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  130  GCTATATTGGTGACAAGTGTTGTCCGCACAAGAATGCAGGATATGCAAACAATGATGAAC  189

Query  121  CAGAACCAGGAACAAGCACCGAAAGAAAACCAGAACGTAAGTGCAGGTGATTCTTCCGTC  180
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  190  CAGAACCAGGAACAAGCACCAAAAGAAAACCAGAACGGAAGTGCAGGTGATTCTTCCGTC  249

Query  181  TTAACGGATGAAACAGTTTTGCCTGAGTCCGATCGAGAGATTGCA-AAAGAGCTT-AAA  237
            |||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||
Sbjct  250  TTAATGGATGAAACAGTTTTGCCTGAGTCGGATCGAGAGATTGCAGAAA-AGCTTTAAA  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5