BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910315
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22100.1 | Symbols: | RNA cyclase family protein | chr5:732... 272 1e-72
> AT5G22100.1 | Symbols: | RNA cyclase family protein | chr5:7328961-7330930
FORWARD LENGTH=1394
Length=1394
Score = 272 bits (147), Expect = 1e-72
Identities = 211/241 (88%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 3 GATCCCTGCTCTCCGCCCTCACGAAGTTAATCTTCTCCGCCACTTAGAAACTGTCACCGA 62
||| |||| |||||| |||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 165 GATTCCTGGTCTCCGACCTCACGAGGTTAATCTTCTCCGCCTCTTAGAAATTGTCACCGA 224
Query 63 TGACGCTGTCGTTGAGATTAACGAGACCGGTAAGGATTC-AATAAAGTACAAGCATGTAA 121
||||| |||||||| |||||||||||| | ||| || | |||||||||||| || ||
Sbjct 225 CGACGCCGTCGTTGATATTAACGAGACC-G---GGACTCGATTAAAGTACAAGCCTGGAA 280
Query 122 TTATAATGGGAGGGAAGAACTTGGTTCACAGCTGCGCTATGAGTCGATT-AGTTGGCTAT 180
|||| ||||||||||||||||||||||||||||| | ||||||||| | ||||||||
Sbjct 281 CTATAGTGGGAGGGAAGAACTTGGTTCACAGCTGCTCGCTGAGTCGATCCA-TTGGCTAT 339
Query 181 TATCTTGAGCCATTGCTTGTGTTGGGTTTATTTGAAAAGAAGCCTCTTTCGATTAGGCTC 240
|||||||||||||||||| ||||||| || |||| |||||||||||||||||||||||||
Sbjct 340 TATCTTGAGCCATTGCTTTTGTTGGGATTGTTTGGAAAGAAGCCTCTTTCGATTAGGCTC 399
Query 241 A 241
|
Sbjct 400 A 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12818275995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5