BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910318
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06320.1 | Symbols: | unknown protein; Has 24 Blast hits to... 682 0.0
> AT1G06320.1 | Symbols: | unknown protein; Has 24 Blast hits
to 24 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:1930523-1931449 FORWARD
LENGTH=667
Length=667
Score = 682 bits (369), Expect = 0.0
Identities = 532/608 (88%), Gaps = 22/608 (4%)
Strand=Plus/Plus
Query 3 GAA-AATGACGTTTGGAGGAGAGAAGAAGATAACTGTGGAAGAATACGTTGATTTCTTCA 61
||| ||||| | ||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 75 GAAGAATGAAGAATGGAGGAGAGAAGAAGATAACAGTGGAAGAATACGTTGAGTTCTGCA 134
Query 62 CCTCTGGGAATTCCCGCAACTTCACCATCTCTTACCTCAATCAGATCCTTCACATGCATG 121
||||||||||||| | | ||||||||| |||||||||||||||||||||| ||||||
Sbjct 135 ACTCTGGGAATTCCATCCATTTCACCATCGCTTACCTCAATCAGATCCTTCATTTGCATG 194
Query 122 GTTTCCGAAAGCTTCACAAATTGCAGAAGAAAATTGTTGGCGAAGCCGTTGA-TACACTG 180
|||||||||||||||||||||| |||||||||||||| | |||||||| || | |||||
Sbjct 195 GTTTCCGAAAGCTTCACAAATTACAGAAGAAAATTGTAGAAGAAGCCGTGGACT-CACTG 253
Query 181 GATCTTCTAGATCTCTCTCGCTCAACTCTGAAAGAAGCCACAGTCTCGTCGCCGTCATCG 240
||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||
Sbjct 254 GATCTTCTAGATCTCTCTCGCTCAACTCTGAAACAAGTCACTGACTCCTCGCCGTCATCG 313
Query 241 TC-TCCCCTAACTCTCGACGAAGTGATAAGCGACATCGAAGCTCTGAAATGGCAGGAATG 299
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TCAT-CCCTAACTCTCGACGAAGTGATAAGCGACATCGAAGCTCTGAAATGGCAGGAATG 372
Query 300 CTGCTTAACCTCGCTCCAGATCATCAATTCCCAGGAAATTACTGGATCAG---TGC-CCA 355
|||||| ||||| ||||||||||||||||||||||||| |||| ||||| | | |||
Sbjct 373 CTGCTTTACCTCACTCCAGATCATCAATTCCCAGGAAACTACTCCATCAGAAAT-CTCCA 431
Query 356 AACCCAAACAGAAGAAATCCAACAAGAGAAAGAAAGCTACTATGAAGAAATCGCTCAACG 415
|||| |||||||| | || |||||||||||||||||||||||||||||||| ||||||
Sbjct 432 AACCGAAACAGAA-A--TCGAACAAGAGAAAGAAAGCTACTATGAAGAAATCTCTCAACA 488
Query 416 CTAATTTCGGAGATGAGAACGAAAACACAatgatgatgatgatgatCCCAGCTATACCGA 475
|||||||||| |||||||| || |||||||||||||||||| | |||| | | ||
Sbjct 489 CTAATTTCGGTGATGAGAATGACAACACAATGATGATGATGCT---CCCA---A--C-GA 539
Query 476 GAAAGATGAGAAACAAAAAGGCGAAGAAGAACCTCAAAAGCATCACCACATTAGTCAATG 535
||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| |
Sbjct 540 AAAAGATGAGAAACAAAAAGACGACGAAGAACCTCAAAAGCATCTCCACATTTGTCAAAG 599
Query 536 ACGCTGCATCAGCAACGAAACCACTCTCTGACTGCAATTTCTCTTCAAGGTTTACTTCTA 595
||||| |||||||| | ||||||||||||| | |||||| || ||||||||| |||||
Sbjct 600 ACGCTTCATCAGCATCCAAACCACTCTCTGCCAACAATTTATCATCAAGGTTTTCTTCTT 659
Query 596 TTCCTTAA 603
|||| |||
Sbjct 660 TTCCATAA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5