BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910333
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06460.1 | Symbols: ACD32.1, ACD31.2 | alpha-crystallin doma... 1393 0.0
> AT1G06460.1 | Symbols: ACD32.1, ACD31.2 | alpha-crystallin domain
32.1 | chr1:1967087-1969561 REVERSE LENGTH=1226
Length=1226
Score = 1393 bits (754), Expect = 0.0
Identities = 826/860 (96%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCATGAATCTATCACCGCTCGACGCAGGCTCGCTGCCGTCGCCGCTCACTTCCCG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 148 ATGGAGCATGAATCTATCACCGCTCGACGCAGGCTCGCTGCCTTCGCCGCTCACTTCCCG 207
Query 61 CCAACCAGTTACGATCCCGCCTCCACCGCATCTCTCGTCCCCTTGAACTGTAGCAGCAGT 120
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 208 GCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTGAACTGCAGCAGCAGT 267
Query 121 TTGAACTCTGTCATCCTAAGGTGTGACAACAAAATCTCTTTCGCCCGCCAAGCATCATCT 180
|||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 268 TTGAACACTGTCATCCAAAGGTGTGACAACAAAATCTCTTTTGCCCGGCAAGCATCATCT 327
Query 181 GAACAGGG-TTTCTTTATGAGGCAAGCTTCACCCGATGATGTCCTTGAGAACTTAGGCAT 239
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 328 GAACAGGGCTTT-TTTATGAGGCCAGCTTCACCCGATGATGTCCTTGAGAACTTAGGTAT 386
Query 240 GAATTTGAAGAACTCTGTCATTAGAAGGGGTGACAACAGGCTGTATTTTGCTCGGCAAGC 299
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GAATTTGAAGAACACTGTCGTTAGAAGGGGTGACAACAGGCTGTATTTTGCTCGGCAAGC 446
Query 300 ATCTTCTGCACAGGGtttttttATGAGACAGGCTTCTACTAATGAGAGGACCATACCACA 359
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 447 ATCTTCTGCACAAGGTTTTTTTATGAGACAGGCTTCGACTAATGAGAGGACCATACCACA 506
Query 360 -G--GATGCTGCATCTACCAAGTATTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTC 416
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 507 TGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTC 566
Query 417 ACCTGCGTACGCTGCACCACACTTTTCTAAGCCTGCAAAAGAGGATTTCGTTTTTCCTTC 476
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 567 ACCTGCGTACGCTGCACCACACTTTTCTAAGCCTGCAAAAGAGGACATCTTTTTTCCTTC 626
Query 477 TGTATCACCAAATCTGCGAAAGGAAAGGCCTAAGCTTGATCTTCCTAAGTTAGCCAATTT 536
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TTTATCACCAAATCTGCAAAAGGAAAGGCCTAAGCTTGATCTTCCTAAGTTAGCCAATTT 686
Query 537 AGGTACTGTTTGGTCTCCGAGATCGAATGTTGCTGAATCCGA-ACACAGCTATGTTGTGG 595
|||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 687 AGGTACTGTTTGGTCTCCCAGATCGAATGTTGCTGAAT-CGACACACAGCTATGTTGTGG 745
Query 596 CAATAGAGCTACCAGGGGCCAGTATCAATGATATAAGAGTGGAGGTCGACAACATAAACT 655
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 746 CAATAGAGCTACCAGGAGCCAGTATCAATGATATAAGAGTGGAGGTTGACAACACAAACT 805
Query 656 TGACTGTGACAGGTAGACGCACATCTATCTGTCAAAAAGTTGATGCAGGCACCAAAGCTT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TGACTGTGACAGGTAGACGCACATCTATCTGTCAAAAAGTTGATGCAGGCACCAAAGCTT 865
Query 716 CAATCCTTGGATATCATAAGCAAGAAATACTACAAGGACCATTCAAAGTTTCCTGGCCAC 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CGATCCTTGGATATCATAAGCAAGAAATACTACAAGGACCATTCAAAGTTTCCTGGCCAC 925
Query 776 TCCCCAGCAATGTGAACAAGGATAATGTTTCCGCTGAATTTATGGATGGGATTCTGAGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TCCCCAGCAATGTGAACAAGGATAATGTTTCCGCTGAATTTATGGATGGGATTCTGAGAA 985
Query 836 TAGTTATTCCAAAGCTTTGA 855
|||| |||||||||||||||
Sbjct 986 TAGTAATTCCAAAGCTTTGA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5