BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910338

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06515.1 | Symbols:  | Protein of unknown function (DUF3317)...   300    3e-81


> AT1G06515.1 | Symbols:  | Protein of unknown function (DUF3317) 
| chr1:1990636-1992197 REVERSE LENGTH=633
Length=633

 Score =  300 bits (162),  Expect = 3e-81
 Identities = 168/171 (98%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  1    ATGAACTGGGTTCAACGCAAAATCTACCTTTATAATGTCACATTCGGGCTCTACATGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  ATGAACTGGGTTCAACGCAAAATCTACCTTTATAATGTCACATTCGGGCTCTACATGCTT  207

Query  61   GATTGGTGGGAACGATATCTCTTCAATTCTTTGGTGGTGGTTTTGATGTGGTTCGTTATA  120
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct  208  GATTGGTGGGAACGATACCTCTTCAATTCTTTGGTGGTTGTTTTGATGTGGTTCGTTTTA  267

Query  121  TACAACGGTACTCGCTACTTTTCGGAGCTTTTCCAGAGGCATTTGACATGA  171
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  TACAACGGTACTCGCTACTTTTCGGAGCTTTTCCAGAGGCATTTGACATGA  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7444599948


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5