BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910342

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06540.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   560    3e-159


> AT1G06540.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G30930.1); 
Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2002877-2003393 
REVERSE LENGTH=409
Length=409

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 349/371 (94%), Gaps = 3/371 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCGACTCCCTTTTGCAAAAGGCCACCTCTGCCCTTGGTGAAGCCAAACAAACCGTT  60
            ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct  1    ATGGCAGACTCCCTTTTGCAAAAGGCCACCTCTGCTCTTGGTGAAGCGAAACAAACTGTT  60

Query  61   ATCGCCTCTGCTGAAAACGCCAAGACCGATGTCGTGGAGGATGCAGTTGACAATGTGGTG  120
            || ||||||||||||| |||||||||| |||||||  |||||||||||||||||||||||
Sbjct  61   ATGGCCTCTGCTGAAACCGCCAAGACCAATGTCGTCAAGGATGCAGTTGACAATGTGGTG  120

Query  121  TCAAGAGGCATAGATGGAGCCAAAACCCTGTTGCACGGATTGGAGGAGAAGAAAGGTGAA  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct  121  TCAAGAGGCATAGATGGAGCCAAAACCCTGTTGCACGGATTAGAGGAGAAGAAAGATGAA  180

Query  181  GTCTCCTCCAAAATCTTGGGAGCTGTTACACACTTTACCGGTAGCGCTGACTCAGCAGCC  240
            ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  GTCTCTTCCAAAATCATGGGAGCTGTTACACACTTTACTGGTAGCGCTGACTCAGCAGCC  240

Query  241  ACAACCGCAAACCGTGACTTACCCGTATCCACAGACGATCAGCCACTCCTAGCGGCAGGT  300
            |||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct  241  ACAACCGCAAACCGTGACTTACCCGTATCCACTGACAATCAGCCACTCCTAGCAGCAGGT  300

Query  301  GATCGTGAGGTCGAGACACCATGGTGGAAGAACTGTTGTGGAGTTCTTGATCTTCTCAAG  360
               |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  301  ---CGTGAGGTCGAGACGCCATGGTGGAAGAACTGTTGTGGAATTCTTGATCTTCTCAAG  357

Query  361  Gcatcatcatc  371
            |||||||||||
Sbjct  358  GCATCATCATC  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5