BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910343
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06550.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1869 0.0
> AT1G06550.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr1:2003627-2007190 REVERSE
LENGTH=1562
Length=1562
Score = 1869 bits (1012), Expect = 0.0
Identities = 1114/1164 (96%), Gaps = 3/1164 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCAAGGAGATCAAAACATTGATGAGCCGGTAGTTGTTATTGAGGAAAAAGGTTCT 60
||| |||||| || ||||||||| ||||||||||| ||| || |||||||||||||||
Sbjct 192 ATGGCTCAAGAAGGTCAAAACATCGATGAGCCGGTTGTTATTGGAGAGGAAAAAGGTTCT 251
Query 61 GTGAGATTGACTGTTCTAAACCGCCCTCGTCAGCTGAATGTCATCTCTCCGGAAGTGGTC 120
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GTAAGATTGACTACTCTTAACCGCCCTCGTCAGCTGAATGTCATCTCTCCGGAAGTGGTC 311
Query 121 CTCAAGCTTGCAGAATATCTCGAATTGTGGGAGAAGGATGACCAAACAAAGCTTATATTG 180
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 312 TTTAAGCTTGCAGAATATCTTGAATTGTGGGAGAAGGATGACCAAACAAAGCTTATATTG 371
Query 181 ATCAAGGGTGCAGGTAGAGCTTTCTCCGCCGGTGGTGATCTGAAGGTGTTTTATCACGGC 240
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 372 ATCAAGGGTACAGGTAGAGCTTTCTCCGCCGGTGGTGATCTAAAGGTGTTTTATCACGGA 431
Query 241 CAGGAATCAAAGGATTCTTGCCTTGAGGTTGTTTACCGGATGTACTGGCTTTGCTATCAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 432 CAGGAATCAAAGGATTCTTGCCTTGAGGTTGTTTACCGGATGTACTGGCTGTGTTATCAT 491
Query 301 ATCCACACATACAAGAAGACACAGGTTTCTCTTGTTAATGGAATATCGATGGGTGGAGGT 360
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 492 ATCCACACATACAAGAAGACGCAGGTGTCTCTGGTTAATGGAATATCGATGGGTGGAGGT 551
Query 361 GCATCATTGATGGTTCCAATGAAGTTTTCAGTTGTGACAGAGAAAACTGTTTTCGCGACT 420
||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 552 GCAGCATTGATGGTCCCTATGAAGTTTTCAGTTGTGACAGAGAAAACTGTTTTTGCGACT 611
Query 421 CCAGAAGCAAGTTTCGGGTTTCACACTGATTGCGGGTTCTCCTACATCCATTCACATCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 612 CCAGAAGCAAGTTTCGGGTTTCACACTGATTGCGGGTTCTCCTACATCCATTCACGTCTT 671
Query 481 CCTGGTCATTTAGGAGAGTTCTTGGCTTTAACTGGGGCAAGATTGAACGGCAAAGAACTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CCTGGTCATTTAGGAGAGTTCTTGGCTTTAACTGGGGCAAGATTGAACGGCAAAGAACTT 731
Query 541 GTAGCAATTGGAATGGCAACACATTTTGTACCTTCTGGTAAATTGATGGATCTGGAGGCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GTAGCAATTGGAATGGCAACACATTTTGTACCTTCTGGTAAATTGATGGATCTGGAGGCA 791
Query 601 CAGCTTGTGAGTTTAGACTCAGGAGACGTGGATGTAGTCCGATCCACAATTGAAGAGTTC 660
| |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 792 CGGCTTGTGAGTTTAGACTCAGGAGATGCGGATGTAGTCCAATCCACAATTGAAGAGTTC 851
Query 661 TCCGAGAAAGTCAACATTGACAAAGACAGCATCCTTAACAAGCAGTCTGTAATCAATGAG 720
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 852 TCCGAGAAAGTCAACCTTGACAAAGACAGCATCCTTAACAAGCAGTCGGTAATCAATGAG 911
Query 721 TGTTTCTCAAAAGAAAGTGTGAAGCAAATCATACAAGCATTTGAAGCTGAAGCAAGCAAA 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 912 TGTTTCTCAAAAGAAAGTGTGAAGCAGATCATACAAGCATTTGAAGCTGAAGCAAGCAAA 971
Query 781 GAAGGGAATGAATGGATTACTCCAGTCATCAAAGGTCTAAAGCGATCGTCACCCACAGGG 840
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GACGGGAATGAATGGATAACTCCAGTCATCAAAGGTCTAAAGCGATCGTCACCCACAGGG 1031
Query 841 TTGAAGATAGTACTACGATCGATCCGTGAAGGTAGGAAACAAACGCTGAGTGATTGCCTG 900
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1032 TTGAAGATAGTACTACAATCGATCCGTGAAGGTAGAAAACAAACGCTGAGTGATTGCCTG 1091
Query 901 AAGAAAGAGTTTCGGCTCACCGTGAATATCTTGAGGAAAACCATATCCCCTGATATGTAT 960
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AAGAAAGAGTTTCGGCTCACCTTGAATATCTTGAGGAAAACCATATCCCCTGATATGTAT 1151
Query 961 GAGGGTATAAGGGCTCTGACCATAGACAAAGACAATTCTCCAAAGTGGAATCCAGCGACA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GAGGGTATAAGGGCTCTGACCATAGACAAAGACAATTCTCCAAAGTGGAATCCAGCGACA 1211
Query 1021 TTAGATGAGGTGGATGACGAGAAAATTAACTCGGTGTTTAAGCCCTTTGAGGATGAT-AT 1079
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||
Sbjct 1212 TTAGATGAGGTGGATGATGAGAAAATCAACTCGGTGTTTAAGCTCTTTGAGGATGATGAT 1271
Query 1080 -T-GAGCTTCAAATCCCTGAAACAGAAGAAAACAGGTGGGGAGGCAAATACGAGACTTCA 1137
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 ATTGAACTACAAATCCCTGAAACAGAAGAAAACAGGTGGGGAGGCAAATACGAGACTTCA 1331
Query 1138 GGCTATGCATCTGTACGAGGATAG 1161
||||| ||||||||||||||||||
Sbjct 1332 GGCTACGCATCTGTACGAGGATAG 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5