BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910347
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06620.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1581 0.0
AT1G04350.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 193 4e-48
> AT1G06620.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:2025601-2027271
FORWARD LENGTH=1292
Length=1292
Score = 1581 bits (856), Expect = 0.0
Identities = 1024/1103 (93%), Gaps = 19/1103 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTCATCACTTCCTATTACAGTCGCTGCAATTAATCGTTCAACTCAACTAAAAGCT 60
||||||||||||||||| | ||| |||||| || |||||||||||| ||| ||||||
Sbjct 18 ATGGAGTCATCACTTCC--CCA-AGTTGCTGCACTTGATCGTTCAACTCTACTCAAAGCT 74
Query 61 TTCGACGAAACTAAAACCGGCGTGAAAGGCCTTGTCGATGCCGGAATCACTGAGATTCCG 120
|||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 75 TTCGACGAGACTAAAACCGGCGTGAAAGGCCTTATCGACGCCGGAATCACAGAGATTCCT 134
Query 121 TCAATATTCCGTGCACCTCCGGCTACTTTAACAAGTCCAAAACCACCTTCCTCCTCTGAG 180
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TCGATATTTCGTGCACCTCCGGCTACTTTAACAAGTCCAAAACCACCTTCCTCCTCTGAT 194
Query 181 TTCACTATCCCGACAATCGATCTCAAAGGAGGT------G----G--CACGCGGCGGAGC 228
||| | ||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct 195 TTCTCCATCCCCACAATCGATCTCAAAGGAGGTGGCACGGACTCGATCACGCGGCGGAGC 254
Query 229 TTGGTGGAGAAGATCGGAGACGCGGCTGAGAAATGGGGTTTTTTCCAGGTGATCAATCAC 288
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 255 TTGGTGGAGAAGATCGGAGACGCGGCAGAGAAATGGGGATTTTTCCAGGTGATCAACCAC 314
Query 289 GGGATCCCGATGGATGTGTTGGAGAAGAAGAAAGAAGGAATTCGTGACTTTCACGAGCAA 348
|||||||||||||||||||||||||||| || ||| || |||||||| ||||||||||||
Sbjct 315 GGGATCCCGATGGATGTGTTGGAGAAGATGATAGATGGGATTCGTGAGTTTCACGAGCAA 374
Query 349 GACACACAAGTGAAGAAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGGTGGTATATAGC 408
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 375 GACACTGAAGTGAAGAAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGATGGTATACAGC 434
Query 409 AGTAACTTCGATCTGTTTAGCTCACCGGCGGCGAATTGGAGAGATACACTCGGTTGTTAT 468
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 435 AGCAACTTCGATCTGTTTAGCTCACCGGCGGCGAATTGGAGAGATACACTTGGTTGTTAT 494
Query 469 ACGGCACCAGATCCTCCC-AGACCGGAGGACTTACCCGCCGCTTGTGGGGAGATGATGAT 527
|| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 495 ACAGCACCAGATCC-CCCGAGACCGGAGGACTTACCCGCCACTTGTGGGGAGATGATGAT 553
Query 528 TGAGTACTCAAAGGAAGTGATGAAATTAGGTAAATTGCTCTTTGAGCTTCTCTCAGAAGC 587
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 554 TGAGTACTCAAAGGAAGTGATGAAATTGGGTAAATTACTCTTCGAGCTTCTCTCGGAAGC 613
Query 588 TCTAGGGTTAAACACTAGTCACCTCAAGGACATGGATTGCACCAACTCCTTGCTGTTGCT 647
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 614 TCTAGGGTTAAACACTAATCACCTCAAGGACATGGATTGCACTAACTCCTTGCTGTTGCT 673
Query 648 CGGCCATTATTACCCGCCATGTCCCCAACCCGACCTTACTTTAGGTTTGACCAAACACTT 707
|||||||||||||||||||||||||||||||||||||||| |||| || || |||||||
Sbjct 674 CGGCCATTATTACCCGCCATGTCCCCAACCCGACCTTACTCTAGGCTTAACGAAACACTC 733
Query 708 CGACAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTCCA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 734 CGACAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTTCA 793
Query 768 TGACCAATATTGGGTTGATGTTCCTCCTGTTCCC-GGAGCTCTTGTTGTTAACGTTGGAG 826
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 794 TGACCAATATTGGGTTGATGTTCCTCCTG-TCCCTGGAGCTCTTGTTGTTAACGTTGGAG 852
Query 827 ATCTTCTTCAGCATATAACAAACGACAAGTTCAAAAGTGTGGAGCATAGGGTTTTGGCGA 886
|||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 853 ATCTTCTTCAGCTTATAACAAACGACAAGTTCATAAGCGTGGAGCATAGGGTTTTGGCCA 912
Query 887 ATGTAGCTGGACCAAGAATTTCAGTGGCTTGTTTCTTCAGTTCGTATTTGATGGCGAATC 946
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 913 ATGTAGCTGGACCGAGAATTTCAGTGGCATGTTTCTTCAGCTCGTATTTGATGGCGAATC 972
Query 947 CTCGAGTTTATGGACCCATCAAAGAGATTTTGTCTGAACAAAATCCTCCCAAATATAGAG 1006
|||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||
Sbjct 973 CTCGAGTTTATGGACCCATCAAAGAGATTTTGTCTGAAGAAAACCCTCCTAATTATAGAG 1032
Query 1007 ACACCACCATTACGGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCTG 1066
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ACACTACTATTACAGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCTG 1092
Query 1067 GATTACTCTATCTCAAGATCTGA 1089
|||||||||||||||||||||||
Sbjct 1093 GATTACTCTATCTCAAGATCTGA 1115
> AT1G04350.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:1165165-1166768
FORWARD LENGTH=1444
Length=1444
Score = 193 bits (104), Expect = 4e-48
Identities = 432/585 (74%), Gaps = 43/585 (7%)
Strand=Plus/Plus
Query 445 TGGAGAGA-TACACTCGGTTGTTATACGGCACCAGATCCTCCCAGA-CCGGAGGACT-TA 501
|||||||| | | ||| |||||| | ||| || |||||| ||| | || ||||| | |
Sbjct 567 TGGAGAGACT-CTTTCGCTTGTTACATGGCTCCTGATCCT-CCAAACCCTGAGGA-TCT- 622
Query 502 CCC-GCCGCTTG-TGGGGAGATGATGATT-GAGTACTCAAAGGA-AGTGATGAAATTAGG 557
||| | ||||| ||| | | ||| || || ||||||||| | | |||||| ||||||
Sbjct 623 CCCTGTGGCTTGCAGGGTTGCT-ATG-TTCGAATACTCAAAGCATA-TGATGAGATTAGG 679
Query 558 TAAATTGCTCTTTGAGCTTCTCTCAGAAGCTCTAGGGTTAA-ACACT-AGTCACCTCAAG 615
| | ||||||||||||||||||||||||||||| || || | | || | | | || ||
Sbjct 680 TGATTTGCTCTTTGAGCTTCTCTCAGAAGCTCTTGGTTTGAGAT-CTGA-TAAGCTTAAA 737
Query 616 -GACATGGATTGCACCAACTCCTTGCTGTTGCTCGGCCATTATTACCCGCCATGTCCCCA 674
| ||||||||||| || ||||| |||||| |||||||||| || |||||||| ||
Sbjct 738 AG-CATGGATTGCATGAAGGGTTTGCTTTTGCTCTGCCATTATTATCCTCCATGTCCACA 796
Query 675 ACCCGACCTTACTTTAGGTTTGACCAAACACTTC-GACAACTCTTTTCTCACTATTCTTC 733
||| || || || | || | || || ||| |||||||| || ||||| |||||||
Sbjct 797 ACCTGATCTAACCATCGGCACAAATAATCA-TTCAGACAACTCCTTCCTCACCATTCTTC 855
Query 734 TTCAAGACCATATCGGAGGGCTTCAAGT-TCTCCATGACCAATATTGGGTTGATGT-TCC 791
| || ||||| ||||| || |||||| | | || || | | | |||||| ||||| ||
Sbjct 856 TCCAGGACCAAATCGGTGGTCTTCAAATCTTTC-ATCAAGACTGTTGGGTCGATGTCTC- 913
Query 792 TCCTGTTCCCGGAGCTCTTGTTGTTAACGTTGGAGATCTTCTT-CAGCATA-TAACAAAC 849
|||| |||| || ||||| || | ||| | |||||| ||||| |||| || |||| ||
Sbjct 914 TCCTATTCCAGGGGCTCTAGTCATCAACATGGGAGAT-TTCTTGCAGC-TAATAACGAAT 971
Query 850 GACAA-GTTCAAAAGTGTGGAGCATAGGGTTTTGGCGAAT-GT--AGCTGGACCAAGAAT 905
||||| || || |||||||||||| ||||| | ||||| | |||| ||| || ||
Sbjct 972 GACAAAGT-CATAAGTGTGGAGCACAGGGTGCTAGCGAACAGGGCAGCTACACCGAGGAT 1030
Query 906 TTCAGTGGCTTG-TTTCTTCAGTTC--GTATTTGATGGCGAATCCT-CGAGTTTATGGAC 961
||||| ||| | ||| ||||| | |||| | | ||||| | | ||||||||||
Sbjct 1031 ATCAGTAGCTAGCTTT-TTCAGCACAAGTATGCG-TC-CGAATTCAACT-GTTTATGGAC 1086
Query 962 CCATCAAAGAGATTTTGTCTGAACAAAATCCTCCCAAATATAGAG 1006
| ||||||||| || | |||||| |||| ||| | ||||| ||||
Sbjct 1087 CAATCAAAGAGCTTCTCTCTGAAGAAAACCCTTCAAAATACAGAG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5