BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910364
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06790.1 | Symbols: | RNA polymerase Rpb7 N-terminal domain... 1020 0.0
> AT1G06790.1 | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing
protein | chr1:2087232-2089447 FORWARD LENGTH=910
Length=910
Score = 1020 bits (552), Expect = 0.0
Identities = 595/616 (97%), Gaps = 2/616 (0%)
Strand=Plus/Plus
Query 1 ATGTTTTATCTTAGCGAGCTTGAACATTCACTAAGAGTGCCTCCGCATCTACTTAACCTC 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 136 ATGTTTTATCTTAGCGAGCTAGAACATTCACTAAGAGTGCCTCCGCATCTACTTAATCTC 195
Query 61 CCTCTCGAAGATGCCATTAAGTCAGTGCTTCAAAATGTGTTCTTGGACAAGGTTTTAGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CCTCTCGAAGATGCCATTAAGTCAGTGCTTCAAAATGTGTTCTTGGACAAGGTTTTAGCT 255
Query 121 GATTTGGGGCTTTGCGTATCTGTTTACGACATTAAATCAATAGAAGGAGGGTTTGTTTTA 180
|||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 256 GATTTGGGGCTTTGTGTATCTATTTACGACATTAAATCAGTAGAAGGAGGGTTTGTGTTA 315
Query 181 CCCGGTGATGGTGCTGCGACCTATAAGGTACGTTTTAGAATTGTTGTGTTCCGTCCATTT 240
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 316 CCCGGTGATGGTGCTGCGACCTATAAGGTAGGTCTTAGAATTGTTGTGTTCCGTCCATTT 375
Query 241 GTTGGTGAGGTCATAGCTGCAAAGTTCAAAGAATCTGACGCCAATGGCTTGCGCTTAACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GTTGGTGAGGTCATAGCTGCAAAGTTCAAAGAATCTGACGCCAATGGCTTGCGCTTAACA 435
Query 301 CTTGGATTTTTTGACGATATTTATGTGCCTGCTCCACTTATGCCGAAACCCAACCGCTGT 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CTTGGATTCTTTGACGATATTTATGTGCCTGCTCCACTTATGCCGAAACCCAACCGCTGT 495
Query 361 GAGCCTGACCCTTATAATAAGAAGCAAATGATATGGGTGTGGGAATATGGAGAACCGTTA 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 496 GAGCCTGACCCTTATAATAGGAAGCAAATGATATGGGTGTGGGAATATGGAGAACCGAAA 555
Query 421 GAAGACT-TCATAATCGACGATTCCTGTCAGATCAAGTTTCGAGTAGAGAGCATCAGCTA 479
||||||| | || | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 556 GAAGACTAT-ATTGTTGACGATGCCTGTCAGATCAAGTTTCGAGTAGAGAGCATCAGCTA 614
Query 480 TCCATCAGTTCCAACTGAGCGAGCAGAGGACGCAAAGCCTTTTGCTCCAATGGTGGTCAC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TCCATCAGTTCCAACTGAGCGAGCAGAGGACGCAAAGCCTTTTGCTCCAATGGTGGTCAC 674
Query 540 TGGGAATATGGATGAGGATGGTTTGGGTCCTGTTTCTTGGTGGGATTCTTATGAACTGAT 599
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 675 TGGGAATATGGATGATGATGGTTTGGGTCCTGTTTCTTGGTGGGATTCTTATGAACAGGT 734
Query 600 TGATCAAGAAGAGTGA 615
||||||||||||||||
Sbjct 735 TGATCAAGAAGAGTGA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5