BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910369
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06850.1 | Symbols: AtbZIP52, bZIP52 | basic leucine-zipper ... 1456 0.0
> AT1G06850.1 | Symbols: AtbZIP52, bZIP52 | basic leucine-zipper
52 | chr1:2105048-2106749 FORWARD LENGTH=1430
Length=1430
Score = 1456 bits (788), Expect = 0.0
Identities = 890/939 (95%), Gaps = 8/939 (1%)
Strand=Plus/Plus
Query 56 CCGATCCAATCCCATCTTCTTCCTTCCACCGCCGATCTCGCTCCGATGATATGTCGATGT 115
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 262 CCGATCCGATTCCATCTTCTTCCTTCCACCGCCGATCTCGCTCCGACGATATGTCCATGT 321
Query 116 TCATGTTCATGGATCCCCTCTCCTCCGGCGCACCACCTTCCTCCGATGACCTTCCCTCCG 175
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 322 TCATGTTCATGGATCCCCTCTCCTCCGCCGCACCACCTTCCTCCGACGACCTTCCCTCCG 381
Query 176 ACGACGATCTCTTCTCTTCTTTCATCGACGTCGATAGCCTCACCTCTAATCCCAACCCCT 235
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 382 ACGACGATCTCTTCTCTTCTTTCATCGATGTCGATAGCCTCACCTCTAATCCCAATCCCT 441
Query 236 tccctaatccctccctctcctccatttccgtttcc-g-g-tgccaa---tcctcctccgc 289
| | ||||| ||||||||||||| ||||||||| | | ||| || ||||||||| |
Sbjct 442 TTCAAAATCCTTCCCTCTCCTCCAACTCCGTTTCCGGCGCTGCTAATCCTCCTCCTCCTC 501
Query 290 cgtcctctcgtcctcGCCACCGTCACAGCAATTCCGTTGACGCTGGATGCGCCATGTATG 349
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CTTCCTCTCGTCCTCGCCACCGTCACAGCAATTCCGTTGACGCTGGATGCGCCATGTATG 561
Query 350 CAGGTGAAATCATGGACGCTAAGAAAGCTATGCCTCCTGAAAAACTCTCTGAGCTTTGGA 409
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CCGGTGATATCATGGACGCTAAGAAAGCTATGCCTCCTGAAAAACTCTCTGAGCTTTGGA 621
Query 410 ACATCGATCCCAAACGCGCCAAAAGGATTTTAGCGAATCGACAATCTGCAGCTCGATCCA 469
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 622 ACATCGATCCCAAACGCGCCAAAAGGATTCTAGCGAATCGACAATCTGCAGCTCGATCCA 681
Query 470 AAGAGAGAAAAGCTCGATACATTCAAGAACTTGAGCGTAAAGTTCAATCTCTTCAAACCG 529
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 682 AAGAGAGAAAAGCTCGATACATTCAAGAACTTGAGCGCAAAGTTCAATCTCTTCAAACCG 741
Query 530 AAGCTACCACTCTCTCTGCTCAGCTCACCCTCTACCAGAGAGATACAAATGGACTAGCAA 589
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 742 AAGCTACCACTCTCTCTGCTCAGCTTACTCTCTACCAGAGAGACACAAATGGACTAGCAA 801
Query 590 ACGAAAACACAGAGCTGAAACTCAGGTTACAAGCAATGGAGCAACAAGCTCAGCTTCGTA 649
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 802 ACGAAAACACAGAGCTGAAACTTAGGTTGCAAGCAATGGAACAACAAGCTCAGCTTCGTA 861
Query 650 ATGCTCTAAACGAAGCGTTGAGGAAAGAAGTTGAAAGGATGAAGATGGAGACAGGAGAAA 709
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ATGCTTTAAACGAAGCGTTGAGGAAAGAAGTTGAAAGGATGAAGATGGAGACAGGAGAAA 921
Query 710 TCTCTGGTAATTCAGATTCCTTTGATATGGGAATGCAGCAGATTCAGTATTCTTCCTCAA 769
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TCTCTGGTAATTCAGATTCGTTTGATATGGGAATGCAGCAGATTCAGTATTCTTCCTCAA 981
Query 770 CGTTCATGGCAATCCCACCATATCATGGCTCAATGAACGTCCATGATATGCAGATGCATA 829
| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 982 CTTTCATGGCTATTCCACCATATCATGGCTCAATGAACCTCCATGATATGCAGATGCATT 1041
Query 830 CTAGTTTCAATCCTATGGAGATGTCCAATCCGCAAAGCGTGTCGGAGTTTCTACAGAACG 889
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 1042 CTAGTTTCAATCCTATGGAGATGTCCAATTCTCAAAGCGTGTCGGACTTTCTACAGAACG 1101
Query 890 GGCGATTGCAAGGGCTAGG-GATAAGTAGCAATAGCTCAAGCTTAGTCAAATCTGAAGGA 948
| ||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1102 GCCGAATGCAAGGGCT-GGAGATTAGTAGCAATAGCTCAAGCTTAGTCAAATCTGAAGGA 1160
Query 949 CCTTCTCTCTCTGCTAGTGAGAGCAGCTCTGCCTATTGA 987
||||||||||||||||||||||| |||||||||||||||
Sbjct 1161 CCTTCTCTCTCTGCTAGTGAGAGTAGCTCTGCCTATTGA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5