BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910388

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07020.1 | Symbols:  | unknown protein; Has 39 Blast hits to...   640    0.0  


> AT1G07020.1 | Symbols:  | unknown protein; Has 39 Blast hits 
to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa 
- 6; Fungi - 3; Plants - 28; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr1:2155213-2156008 REVERSE 
LENGTH=674
Length=674

 Score =  640 bits (346),  Expect = 0.0
 Identities = 418/451 (93%), Gaps = 11/451 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAGAGAACAACAACGCCGGTAGCGATTCAGACTCTAATTCCGTCGAAGATTCACAA  60
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  125  ATGGAAGAGAACAACAACGCCGGGAGCGATTCCGACTCTAATTCCGTCGAAGATTCACAA  184

Query  61   GACTATTACGAACCGATCTCAGCCGTCGATCTT-GATAACGCCAACGACGATGACGATGA  119
            |||||||||||||||||||||||||||||| ||  ||||| |||||||||||||  | ||
Sbjct  185  GACTATTACGAACCGATCTCAGCCGTCGAT-TTATATAACTCCAACGACGATGA--A-GA  240

Query  120  TGACAGTTATCTTCCAG-TCGGTGGCA-ATGGTCTCTCTAACGGCCATTGTATGATTCCG  177
             |||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||
Sbjct  241  AGACAGTTATCTTCC-GATCGGTGG-AGATGGTCTCTCTAACGGCCATTGTATGATTCCG  298

Query  178  GAAGCAGAGGAAGGAATCTCCTCTATTAGAATAAACGA-AGACGGAGAGAGCGAAGAAGA  236
            || ||||||| ||||||||| |||||||| |||||||| | ||  ||| |||||||||||
Sbjct  299  GATGCAGAGGTAGGAATCTCTTCTATTAGTATAAACGATA-ACACAGACAGCGAAGAAGA  357

Query  237  AACAGAGACGGAGACTGAACCGGAGATCCGTAGAGCATTTGAAGAGGACGAACGGCGTCG  296
             |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||  |
Sbjct  358  GACAGAGACGGAGACTGGACCGGAGATCCGTAGAGCGTTTGAGGAGGACGAACGGCGGAG  417

Query  297  AAGATCGCCGTTAGTGGCGGAGAACGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTC  356
            ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct  418  AAGATCGCCGTTAGTGGAGGAGAATGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTC  477

Query  357  GTTCCCTGGAACGGCTCCTGATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCA  416
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  ATTCCCTGGAACGGCTCCTGATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCA  537

Query  417  GCTTCGAAGATTGAGATCCACTTCTCAATAA  447
            |||||||||||||||| ||||||||||||||
Sbjct  538  GCTTCGAAGATTGAGAACCACTTCTCAATAA  568



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5