BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910390
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07025.1 | Symbols: | Mitochondrial substrate carrier famil... 425 5e-118
AT1G07020.1 | Symbols: | unknown protein; Has 39 Blast hits to... 298 1e-79
AT3G31442.1 | Symbols: SADHU7-2 | transposable element gene | c... 67.6 3e-10
AT3G31440.1 | Symbols: | transposable element gene | chr3:1280... 67.6 3e-10
> AT1G07025.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:2157658-2158158 REVERSE LENGTH=501
Length=501
Score = 425 bits (230), Expect = 5e-118
Identities = 289/318 (91%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 598 GCTTTGCGTTCGGTAATCCAAACGGAAGGACCATCGGCTCTGTACTGTGGGATATGGTCT 657
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 GCTCTGCGTTCGGTAATCCAAACGGAAGGACCATCGGCTCTGTACCGTGGGATATGGTAT 240
Query 658 ATGAGGCATGGAGCCATGGGACCCGCTCACTTCATTTATTTCTCCTTCTACGAAGTATCC 717
||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct 241 ATGAGGCATGGAGCCATGGGACCCGCTCAATTCGTACATTTCTCCTTCTACGATGTATCC 300
Query 718 AAGAAGTTCTTGTCTGCCGGGAATCCAAACAACTCTGTGGTCCATGCGATTTCC-GGCGC 776
||||| ||||||||| ||||||||||||||||| | ||||| || | ||||||| || ||
Sbjct 301 AAGAATTTCTTGTCTACCGGGAATCCAAACAACCCCGTGGTGCACGTGATTTCCTGG-GC 359
Query 777 CTTCGCGGCTGTATGGAGTTATGCCGTTTCAACTCCCGTGGATATGGCGAAGCTGAGGCA 836
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 360 CTTCACGGCTGTATGGAGTTATGCCGTTTCAACTCCTGTTGATATGGCGAAGCTGAGGCA 419
Query 837 GCAGAGTGGGTTCGGGAACTACAAAGGCGTCTGGGATTGCGTCAAAAGGGTGACTTGTGA 896
|| | ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 420 CCAAAATGGGTTCGGTAACTACAAAGGCGTCTGGGATTGCGCCAAAAGGGTGACTCATGA 479
Query 897 GGAAGGGATCAGTAGGTT 914
|||||| ||||||| |||
Sbjct 480 GGAAGGAATCAGTAAGTT 497
Score = 169 bits (91), Expect = 9e-41
Identities = 122/136 (90%), Gaps = 5/136 (4%)
Strand=Plus/Plus
Query 466 ATGGCAGTGGAA-ACTTTAACGGCACCAAAATTTAAGGAACAAGACCTCCAGTTCTGGCA 524
||||| |||||| | || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCGGTGGAAGA-TTCAACGGCACCAAAATTTAAGGAACAAGACCTCCAGTTGTGGCA 59
Query 525 GTTGATGATTGCTGGTTCAGTTGCTGGTTCCGTCAAGCACATG-CGATGTTTCCTGTTCG 583
|||||||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||
Sbjct 60 GTTGATGATTGCAGGTTCAGTTGCTGGTTCCTTTAAGAACATGACGATGTTTCCTGTTCG 119
Query 584 CATCATTA-ATCAACG 598
|| | || |||||||
Sbjct 120 CACC-TTGGATCAACG 134
> AT1G07020.1 | Symbols: | unknown protein; Has 39 Blast hits
to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 6; Fungi - 3; Plants - 28; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:2155213-2156008 REVERSE
LENGTH=674
Length=674
Score = 298 bits (161), Expect = 1e-79
Identities = 181/191 (95%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 1385 CGGAGATCCGTAGAGCATTTGAAGAGGACGAACGGCGTCGAAGATCGCCGTTAGTGGCGG 1444
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 378 CGGAGATCCGTAGAGCGTTTGAGGAGGACGAACGGCGGAGAAGATCGCCGTTAGTGGAGG 437
Query 1445 AGAACGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTCGTTCCCTGGAACGGCTCCTG 1504
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 438 AGAATGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTCATTCCCTGGAACGGCTCCTG 497
Query 1505 ATTGGGCCTCCGATGTTAATGAAGATCGTTGGATTGATCAGCTTCGAAGATTGAGATCCA 1564
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 498 ATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCAGCTTCGAAGATTGAGAACCA 557
Query 1565 CGTCTCAATAA 1575
| |||||||||
Sbjct 558 CTTCTCAATAA 568
Score = 69.4 bits (37), Expect = 1e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1233 ACAACTTCATCGTCTTTTTCAGTTCAACCTCCGACAT 1269
|||||||||||||||||||||||||||||||||||||
Sbjct 51 ACAACTTCATCGTCTTTTTCAGTTCAACCTCCGACAT 87
Score = 54.7 bits (29), Expect = 3e-06
Identities = 39/43 (91%), Gaps = 3/43 (7%)
Strand=Plus/Plus
Query 1218 TCAACTCAGTGTAATACAACTTCATCGTCTTTTTCAGTTCAAC 1260
|||| || |||| | ||||||||||||||||||||||||||||
Sbjct 13 TCAA-TCCGTGT-A-ACAACTTCATCGTCTTTTTCAGTTCAAC 52
> AT3G31442.1 | Symbols: SADHU7-2 | transposable element gene |
chr3:12803911-12804796 REVERSE LENGTH=886
Length=886
Score = 67.6 bits (36), Expect = 3e-10
Identities = 103/134 (77%), Gaps = 9/134 (7%)
Strand=Plus/Plus
Query 283 CTTTCCGGGAGACTTGTGGTGGGTTGGTTCGTCGGAGGCATGAAA-TTGA-TGGCGGAAA 340
|||||||||||||||||||||||||||| |||| ||| ||| | || || || |||
Sbjct 588 CTTTCCGGGAGACTTGTGGTGGGTTGGTGCGTCAGAGT--TGAGACTTTTCTGACGAAAA 645
Query 341 CCGGTCTCTTTCGCCGAAATT--TCACTGTCTTCGGTTGCAGCCACAAAACTCTGGGTCT 398
|||| ||||||| || || ||| | | ||| | || |||||||| | |||||||
Sbjct 646 CCGGAATCTTTCGTCGGT-TTGGTCAAT-T-TTCCGAGGCGGCCACAAAGCGGTGGGTCT 702
Query 399 TGAGCCCGCCGGAT 412
|||| |||||||||
Sbjct 703 TGAGTCCGCCGGAT 716
> AT3G31440.1 | Symbols: | transposable element gene | chr3:12800324-12806091
REVERSE LENGTH=5768
Length=5768
Score = 67.6 bits (36), Expect = 3e-10
Identities = 103/134 (77%), Gaps = 9/134 (7%)
Strand=Plus/Plus
Query 283 CTTTCCGGGAGACTTGTGGTGGGTTGGTTCGTCGGAGGCATGAAA-TTGA-TGGCGGAAA 340
|||||||||||||||||||||||||||| |||| ||| ||| | || || || |||
Sbjct 1883 CTTTCCGGGAGACTTGTGGTGGGTTGGTGCGTCAGAGT--TGAGACTTTTCTGACGAAAA 1940
Query 341 CCGGTCTCTTTCGCCGAAATT--TCACTGTCTTCGGTTGCAGCCACAAAACTCTGGGTCT 398
|||| ||||||| || || ||| | | ||| | || |||||||| | |||||||
Sbjct 1941 CCGGAATCTTTCGTCGGT-TTGGTCAAT-T-TTCCGAGGCGGCCACAAAGCGGTGGGTCT 1997
Query 399 TGAGCCCGCCGGAT 412
|||| |||||||||
Sbjct 1998 TGAGTCCGCCGGAT 2011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5