BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910393

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07050.1 | Symbols:  | CCT motif family protein | chr1:21641...   933    0.0  


> AT1G07050.1 | Symbols:  | CCT motif family protein | chr1:2164188-2165239 
REVERSE LENGTH=833
Length=833

 Score =  933 bits (505),  Expect = 0.0
 Identities = 561/588 (95%), Gaps = 3/588 (1%)
 Strand=Plus/Plus

Query  1    ATGGATAAACAGAGGTTGCCgaag-aag--gaagaagaagaagaagaTCATCTACTTACT  57
            ||||||| ||| |||||||||||| |||  ||||||||||||||||||||||||||| ||
Sbjct  107  ATGGATACACAAAGGTTGCCGAAGAAAGAAGAAGAAGAAGAAGAAGATCATCTACTTTCT  166

Query  58   TCAACCTTCGAGTCCATCAATGGTCTCTCTCGAGACCAACACAACCATTCTATAGATGAT  117
            ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct  167  TCAACCTTCGAGTCCATCAATGGTCACTCTCGAGACCAACACAATCATTCTATAGATGAT  226

Query  118  TTCGACAGCATTTTCGACATCACCATTGATAATTTAAGCTGCTCTCACGAACTCACATGG  177
            ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct  227  TTCGAGAGCATTTTCGACATCACCATTGACAATTTAAGCTGCTCTAACGAACTCACGTGG  286

Query  178  GATTTCTGGGAAGAAGACGAAGATGAAGATGTAGGGGAAGAAGAAAAAAGATTGAGTACT  237
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  287  GATTTCTGGGAAGAAGACGAAGATGAAGATGTAGGGGAAGAAGAAAAAAGATCGAGTACT  346

Query  238  GATCAAGAAGGCTCAAGTTTCGGGTTTTGGGAGAATAAGCCGACGGATTATGAAGACAAA  297
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  347  GATCAAGAAGGCTCAAGTTTTGGGTTTTGGGAGAATAAGCCGACGGATTATGAAGACAAA  406

Query  298  GACTTGGGCCTGAAGCTAAATCTGAACCATCAAGAAGTTATTGATGCTTGGTCTGATCAC  357
            |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  407  GACTTGGGTCTGAAGCTGAATCTGAACCATCAAGAAGTTATCGATGCTTGGTCTGATCAC  466

Query  358  CAGAAACCTCTGTGGACAGATAATACAACTGTGGCCAATTCCCTTTATAAGGGAGAAGTT  417
            |||||||||||||||||||||| | ||||| ||| ||||||| |||||| ||||||||| 
Sbjct  467  CAGAAACCTCTGTGGACAGATACTTCAACTCTGGACAATTCCGTTTATAGGGGAGAAGTG  526

Query  418  CCAGTGATAGAGGAGGAGAGAAACATGCGAAGAGAAGCAAGTGTGTTAAGGTACAAAGAG  477
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  527  CCAGTGATAGAGGAGAAGAGAAACATGCGAAGAGAAGCAAGTGTGTTAAGGTACAAAGAG  586

Query  478  AAAAGACAGAGTAGGCTCTTCTCTAAGAAGATAAGGTACCAAGTCCGAAAACTCAACGCT  537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  587  AAAAGACAGAGTAGGCTCTTCTCTAAGAAGATAAGGTACCAAGTCCGAAAACTCAACGCA  646

Query  538  GATAAACGACCTCGTTTTAAGGGTCGGTTCGTGAAAAGGGAGACTTAA  585
            |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  647  GATAAACGACCTCGTTTTAAGGGTCGGTTCGTGAAAAGAGAGACTTAA  694



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28131122320


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5