BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910431
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07410.1 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | R... 1101 0.0
AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase hom... 169 4e-41
> AT1G07410.1 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b |
RAB GTPase homolog A2B | chr1:2276053-2277154 FORWARD LENGTH=755
Length=755
Score = 1101 bits (596), Expect = 0.0
Identities = 628/644 (98%), Gaps = 0/644 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCGAATAGATCATGAGTACGATTACTTGTTCAAGATCGTCCTGATCGGCGAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 ATGGCGAATAGAATAGATCATGAGTACGATTACTTGTTCAAGATCGTCCTGATCGGCGAT 170
Query 61 TCCGGTGTTGGTAAATCCAACATTCTCTCTCGATTCACCAGAAATGAGTTCTGTCTCGAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 171 TCCGGTGTTGGTAAATCCAACATTCTCTCTCGATTCACCAGAAACGAGTTCTGTCTCGAA 230
Query 121 TCCAAATCCACCATTGGCGTCGAATTCGCCACCCGTACTTTACAGGTTGAAGGCAAAACA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 231 TCCAAATCCACCATTGGCGTCGAATTCGCCACCCGGACTTTACAGGTTGAAGGCAAAACA 290
Query 181 GTGAAGGCTCAGATTTGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GTGAAGGCTCAGATTTGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCT 350
Query 241 TACTACAGAGGAGCTGTTGGAGCTCTTCTTGTCTACGACATAACCAAAAGGCAAACTTTT 300
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 351 TACTACAGAGGAGCTGTTGGAGCTCTTCTTGTCTACGACATAACCAAGAGACAAACTTTT 410
Query 301 GAGAATGTCCTGAGATGGTTACGTGAGCTTAGGGACCATGCTGATTCCAACATTGTTATC 360
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 411 GAGAATGTCTTGAGATGGTTACGTGAGCTAAGGGATCATGCTGATTCCAACATTGTTATC 470
Query 361 ATGATGGCTGGAAACAAATCAGATCTTAATCACTTGAGATCTGTTGCTGATGAAGATGGT 420
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 471 ATGATGGCTGGAAACAAATCAGACCTGAATCACTTGAGATCTGTTGCTGATGAAGATGGT 530
Query 421 CGCTCTCTCGCCGAGAAGGAAGGTTTGTCGTTTCTCGAGACATCTGCTTTAGAAGCAACT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 531 CGCTCTCTCGCCGAGAAGGAAGGTTTGTCGTTTCTCGAGACATCTGCTTTAGAAGCGACT 590
Query 481 AACATCGAGAAAGCGTTTCAGACTATTTTATCTGAGATTTATCATATCATAAGCAAGAAA 540
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 591 AACATCGAGAAAGCGTTTCAGACCATTTTGTCTGAGATTTATCATATCATAAGCAAGAAA 650
Query 541 GCTTTAGCTGCACAAGAAGCTGCAGGTAATCTTCCGGGGCAAGGAACTGCGATCAATATA 600
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 651 GCTTTAGCGGCACAAGAAGCTGCAGGTAATCTTCCGGGCCAAGGAACAGCGATCAATATA 710
Query 601 TCAGATTCATCTGCAACTAACAGAAAAGGATGCTGTTCTACCTA 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCAGATTCATCTGCAACTAACAGAAAAGGATGCTGTTCTACCTA 754
> AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase homolog
A1B | chr1:5787330-5789249 REVERSE LENGTH=912
Length=912
Score = 169 bits (91), Expect = 4e-41
Identities = 286/378 (76%), Gaps = 22/378 (6%)
Strand=Plus/Plus
Query 20 ATGAGTACGATTACTTGTTC-AAGATCGTCCTGATCGGCGATTCCGGTGTTGGTAAATCC 78
|||| ||||||||| | ||| ||| | || || || |||||||| || ||||| ||||||
Sbjct 125 ATGACTACGATTACCTCTTCAAAG-TTGTTCTTATAGGCGATTCTGGAGTTGGCAAATCC 183
Query 79 AA-CATTCTCTCTC-GATTCACCAGAAATGAGTTCTGTCTCGAATCCAAATCCACCATTG 136
|| | | || || | ||||||| | ||| |||||| ||| || || |||||||||||||
Sbjct 184 AATC-TCCTTTC-CAGATTCACTAAAAACGAGTTCAATCTAGAGTCTAAATCCACCATTG 241
Query 137 GCGTCGAATTCGCCACCCGTACTTTACAGGTTGAAGGCAAA-ACAGTGAAGGCTCAGATT 195
|||||||||||||||| ||||| ||| | || || |||||| | || || |||||||||
Sbjct 242 GCGTCGAATTCGCCACTCGTACCTTAAAAGTCGATGGCAAAGTC-GTTAAAGCTCAGATT 300
Query 196 TGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCTTACTACAGAGGAGCT 255
||||||||||| ||||| ||| | || || || ||||| ||||| || ||| | |||||
Sbjct 301 TGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCATATTACCGTGGAGCC 360
Query 256 GTTGGAGCTCTTCTTGTCTACGACATAAC-CAAAAG-GCAAACTTTTGAGAATGTCC-T- 311
|| || || || || || || || |||| | | |||| | |||||||| || |
Sbjct 361 GTGGGTGCACTCCTAGTATATGATGTAACTCGCC-GTGCAA-CATTTGAGAACGTAGATC 418
Query 312 GAGATGGTTAC-GTGAGCTTAGGGACCATGCTGATTCCAA-CATTGTTA-TCATGATGGC 368
| | |||||| | ||||| | | |||| | ||| |||| |||||| | | ||| |||
Sbjct 419 G-G-TGGTTAAAG-GAGCTCAAGAACCACACAGAT-CCAAACATTGT-AGTGATGCTGGT 473
Query 369 TGGAAACAAATCAGATCT 386
||| |||||||| |||||
Sbjct 474 TGGTAACAAATCTGATCT 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5