BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910444
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07540.1 | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-232104... 3025 0.0
> AT1G07540.1 | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-2321048
REVERSE LENGTH=1893
Length=1893
Score = 3025 bits (1638), Expect = 0.0
Identities = 1811/1895 (96%), Gaps = 10/1895 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTGCAAAAGAGGCTCGATTATGGATTCAATGGCTATGAGGTGCCTCACACACCT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTTGCAAAAGAGGCCCGATTATGGATTCAATGGCTATGAGGTGCCTCACACACCT 60
Query 61 CGAGCCGCTAGATCACCAAGAAAGAGTGCTTTCAAGAAGAAAAGCGAAAACCATCAAATA 120
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGCTGCCAGATCACCAAGAAAGAGTGCTTTCAAGAAGAAAAGCGAAAACCATCAAATA 120
Query 121 TCGTCTTTCGATTTGTTGGCTGCAGTAGCTGGAAAACTGTTGCTTGAAGGTGGGAATTCT 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TCGTCTTTCGATTTGTTGGCTGCAGTAGCTGGAAAACTGCTGCTTGAAGGTGGGAATTCT 180
Query 181 TCTTCCTCAAGTAACAACACCTCTGGTAATAATGAAGATCAGTGTGCCGTTAAGAAAGAA 240
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCTTCCTCAAGTAACAATACCTCTGGTAATAATGAAGATCAGTGTGCAGTTAAGAAAGAG 240
Query 241 CCGCTTAATGGCAGCAATCTAATGGTGGAAGAAGAGACTACTAATTGTGATCATGATAAT 300
|||||||| ||| || || |||||||||||||||||||||| |||| |||||||||||||
Sbjct 241 CCGCTTAACGGCGGCGATATAATGGTGGAAGAAGAGACTACAAATTCTGATCATGATAAT 300
Query 301 AATAATGCTGAAAGGAGTTTCTTTGTCTCTGAGATTCTTCCAAAATCTCATGAAATACAA 360
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 301 AATAATGCTGAACGGAGTTTCTTTGTCTCTGAGATTCTTCAAAAATCTCATGAAATGCAA 360
Query 361 AGCTTTAACAGATCTCCAAGTCCCCTTAAAGAGTTCCATTTTGGATCTTCTTCTGGTATA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCTTTAATAGATCTCCAAGTCCCCTTAAAGAGTTCCATTTTGGATCTTCTTCTGGTATA 420
Query 421 ACTTCTGATTCCTCGGACAAGTTTGAAACTCAAGAATTGGCGTATGATGAATCCAAGATC 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTCTGATTCCTCTGAGAAGTTTGAAACTCAAGAATTGGCGTATGATGAATCCAAGATC 480
Query 481 AATAATGGTGATTGCTATAGGTCAGAGTCTAATGATAAGAAATCAATGCTTGGGGGGCTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 481 AATAATGGTGATTGCTATAGGTCAGAGTCTAATGATAAGAAATCAATGCTTGGAGGGTTA 540
Query 541 AATTTTGAAGCAAAGTTAACAAGGAATGTTTTAGCCAAGGATGAGAATCATATAGGTAGT 600
|||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 541 AATTTTGAAGCAAAGTTATCAAGGAATGTTGTAGGTAAGGATGAGAAACATATAGGTAGT 600
Query 601 GGATTCAGAAAACCAATTCCCCAAAATCCTTCAGCATGCTCTGATGCTATAGATTTACAC 660
|||||||| ||||| |||||||||||||||||| ||||||| |||| | |||||||||||
Sbjct 601 GGATTCAGGAAACCTATTCCCCAAAATCCTTCAACATGCTCCGATGATGTAGATTTACAC 660
Query 661 GGTAAGGAAAATGATGATGGCGAAAACTTCTCAGCATGTTACAGAACAAAATCATTTAGG 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GGTAAGGAAAATGATGATGGCGAAAACTTCTCAGCCTGTTACAGAACAAAATCATTTAGG 720
Query 721 TCAACTCTGCGTATCGGAGATAGAAGAATAAGGAAAGTTTTAGCTTCCAAGTATTGTAAA 780
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 TCAACTCTGCGTATTGGAGATAGAAGAATAAGGAAAGTTTGGGCTTCCAAGTATTGTAAA 780
Query 781 GTCCCTCCAAAGCTGAAAGATACAACGGTACCTAATTCAGACTTGGACTTGAAGTCTGAT 840
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 781 GTCCCTCCAAAGCTGAAAGATACAACAGTAACTAATTCAGACTTGGACTTGAAGTCTGAT 840
Query 841 TACTATAGCAAGAAACATTGTCTTAAAAGCTTAAGATCAGAGAGAAACTATCCAATCAAG 900
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 841 TACTATAGCAAGAAACATTGTCTTAAAAGCTTAAGATCAGAGAGGAACTATCCAATAAAG 900
Query 901 AAAAGAAGATACTTTGATGGTTATACAGCATCACAATCCGAGGAAACAAGTAAAAATGAA 960
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 901 AAAAGGAGATACTTTGATGGTTATACAGCATCACAATCCGAGGAAACAAATAAAAATGAA 960
Query 961 GGCC-TTCCTGGTTCACCTCGAAAGGCTTCAGCTTTTCTATCTTCCATAGCTTGTCAGAA 1019
|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 961 GGCCAGT-CTGGTTCACCTCGAAAGGCTTCAGCTTTTCTATCATCCATAGCTTGTCAGAA 1019
Query 1020 GCA-AC--CAGCATTCCAATCATCAAGAGATTCTAATAACGTGAAACTTGGGATCAAGTC 1076
||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1020 GCAGCCTGCAGCATTCCAATCACCAAGAGATTCTAATAACGTGAAACTTGGAATCAAGTC 1079
Query 1077 ATTTAGAGTTCCTGAACTTTTCATTGAAATTCCTGAGACCGCTACTGTCGGTTCGCTAAA 1136
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1080 ATTTAGAGTCCCTGAACTTTTCATTGAAATTCCAGAGACAGCTACTGTCGGTTCGCTAAA 1139
Query 1137 GAGGACAGTCTTGGAAGCTGTGACCTCGATACTTGGAGGTGGATTACGCATAGGTGTTCT 1196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGGACAGTGTTGGAAGCTGTGACCTCGATACTTGGAGGTGGATTACGCATAGGTGTTCT 1199
Query 1197 TGTTCATGGAAAAAAGGTTAGAGACGACAGTAAAATGCTTCTTCAGACTGGACTCTCTCT 1256
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 GGTTCATGGGAAAAAGGTTAGAGACGACAGTAAAATGCTTCTACAGACTGGACTCTCTCT 1259
Query 1257 AGACACTCTTTCAGATAATTTAGGGTTTTGTCTTGAGCCCAATCCTCCACAATCCACAAA 1316
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 AGACACTCTTTCAGACACTTTAGGGTTTTGTCTTGAGCCAAATCCTCCACAATCCACAAA 1319
Query 1317 ACCGCTTTCTACTGAAGATTCTGACTTTGCACGTCCATGTAATGTACCTCACACTCTAAC 1376
||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 ACCACTATCTCCTGAAGATTCTGACTTTGCACGTCCCTGTAATGTACCTCACACTCTAAC 1379
Query 1377 AAGGTGTTTCCCATCACCAGGGAAGCATGCTAAACCGAGTAATTCTGTAGAAAGTGACCT 1436
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 AAGGTGTCTCCCATCACCAGGGAAGCATGCTAAACCGAGTAACTCTGTAGAAAGTGACCT 1439
Query 1437 TGACTCCAAACCCTCTGCACCAAATAGGGGTAAAACCATCTACTCCAGAGCCTTGGA-TC 1495
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1440 TGACTCCAAACCCTCTGCACCAAATAGGGGTAAAACCATCTACTCGAGAGCCTT-GATTC 1498
Query 1496 CTG--TC-CCTCTACATGCTCAGGCTTTGACAGTAGTCCCACCTCGGAAAACCAAGCGAT 1552
||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1499 CTGTATCTCCTCTGCATGCTCAGGCGTTGACAGTAGTCCCACCTCGGAAAACCAAGCGAT 1558
Query 1553 CTGAGGTGGCACAGCGTAGAATCCGTCGACCTTTTTCTGTTGCCGAAGTAGAGGCCCTTG 1612
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1559 CTGAAGTGGCACAGCGTAGGATCCGTCGACCTTTTTCTGTTGCTGAAGTAGAGGCCCTTG 1618
Query 1613 TTCAAGCTGTGGAGAGACTTGGGACCGGAAGGTGGCGTGACGTAAAATTGCGAGCTTTTG 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTCAAGCTGTGGAGAGACTTGGGACCGGAAGGTGGCGTGACGTAAAATTGCGAGCTTTTG 1678
Query 1673 ATAATGCTAAGCACCGAACTTATGTTGATTTGAAGGACAAATGGAAGACGTTGGTGCACA 1732
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1679 ATAATGCTAAGCACCGTACTTACGTTGATTTGAAGGACAAATGGAAGACGCTGGTGCACA 1738
Query 1733 CAGCAAGAATATCGCCGCAACAAAGGAGAGGTGAGCCAGTTCCACAGGAGCTCTTAGACC 1792
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CAGCAAGAATATCACCGCAACAAAGGAGAGGTGAGCCAGTTCCACAGGAGCTCTTAGACC 1798
Query 1793 GGGTACTAACGGCTCATGCCTACTGGTCCCAGCAACAGGGGAAACACCAGTTGCTAGAGG 1852
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1799 GGGTACTAACGGCTCATGCCTACTGGTCCCAGCAACAGGGGAAACACCAGTTACTAGAGG 1858
Query 1853 GACCCCAGCAGCTCGAGACCAGTCTTGGTCTATAG 1887
|||||||||||||||||||||||||||||||||||
Sbjct 1859 GACCCCAGCAGCTCGAGACCAGTCTTGGTCTATAG 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93423214245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5