BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910452
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07640.3 | Symbols: OBP2 | Dof-type zinc finger DNA-binding ... 1400 0.0
AT3G50410.1 | Symbols: OBP1 | OBF binding protein 1 | chr3:1870... 132 8e-30
AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 126 4e-28
> AT1G07640.3 | Symbols: OBP2 | Dof-type zinc finger DNA-binding
family protein | chr1:2354354-2356227 REVERSE LENGTH=1588
Length=1588
Score = 1400 bits (758), Expect = 0.0
Identities = 930/1007 (92%), Gaps = 35/1007 (3%)
Strand=Plus/Plus
Query 3 GCCTACGAATTCGAATCATCAGCATCATCATCAGCACCAGCTTCTCGAAAATGGAAGTAT 62
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 242 GCCTACGAATTCGAATCATCAGCATCATCTTCAACACCAGCTTAACGAAAATGGAAGTAT 301
Query 63 AATTAGTGGCCACGGAC---TACTCTCTCACCAACTTCCACCTCTCCAAGCAAACCCTAA 119
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AATAAGTGGCCACGGACTAGTACTCTCTCACCAACTTCCACCTCTCCAAGCAAACCCTAA 361
Query 120 CCCTAGCCACCAATATGTCGCTACCTCTGCTGGTCTTCCGTC---GA------GATCGAT 170
||||| |||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 362 CCCTAACCACCACCATGTCGCTACCTCTGCTGGTCTTCCGTCAAGGATGGGTGGATCGAT 421
Query 171 GGCGGAGAGAGCGCGGCAAGCCAAAATTCCTCCACCT-GAGGGACCCCTAAAGTGTCCTC 229
|||||||||||| |||| ||||| ||||||||| || | ||||||||||||||||||||
Sbjct 422 GGCGGAGAGAGCAAGGCAGGCCAACATTCCTCCA-CTAGCGGGACCCCTAAAGTGTCCTC 480
Query 230 GATGCGACTCCAGCAACACTAAGTTCTGTTACTACAACAACTATAACCTCACTCAGCCTC 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGCGACTCCAGCAACACTAAGTTCTGTTACTACAACAACTATAACCTCACTCAGCCTC 540
Query 290 GTCACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGCGGCGCCCTGAGAAACGTCC 349
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 GTCACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGGGGCGCCCTGAGAAACGTCC 600
Query 350 CTGTCGGTGGAGGCTGCCGGAGGAACAACAAGAAGGGCAAAAATGGAAATTCAAAATCTT 409
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 601 CTGTAGGTGGAGGCTGCCGGAGGAATAACAAGAAGGGCAAAAATGGAAATTTAAAATCTT 660
Query 410 CTTCTTCTTCGTCCAAACAGTCTTCTTCCTCGGCCAACGTTCCAAGTCCTAGCTCAGGAC 469
||||||||||||||||||||||||| | |||| ||||| || |||||||||||||||||
Sbjct 661 CTTCTTCTTCGTCCAAACAGTCTTC--C-TCGGTCAACGCTCAAAGTCCTAGCTCAGGAC 717
Query 470 AGCTAAGGACAAATCATCAGTTCCCGTTTTCACCAACTCTTTTTAATCTCACTCAACTCG 529
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 718 AGCTAAGGACAAATCATCAGTTCCCTTTTTCACCAACTCTTTACAATCTCACTCAACTCG 777
Query 530 GAGGTATTGGTTTGAACTTAGCCGCTACTAATGGCAACAACCAAGCTCACCAGATCGGTT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGGTATTGGTTTGAACTTAGCCGCTACTAATGGCAACAACCAAGCTCACCAGATCGGTT 837
Query 590 CGAGTTTGATGA--A-CGATTTAGGGTTTCTCCATGTCGGAAATGGACGAAATACTTCAA 646
| |||||||||| | |||| ||||||||||||||| | | |||||||||||||
Sbjct 838 CCAGTTTGATGATGAGCGATCTAGGGTTTCTCCATG--G-A------CGAAATACTTCAA 888
Query 647 CTCCGATGACAGGAAACATTCATGaaaacaacaacaacaa---c---gaaaacaacCTGA 700
|||||||||| |||||||||||||||||||||||||| || | ||||||||||| |
Sbjct 889 CTCCGATGACGGGAAACATTCATGAAAACAACAACAATAATAACAATGAAAACAACCTAA 948
Query 701 TGGCATCCGTTGGATCGTTGAGTCACTTTGCTCTCTTCGATCCAACAACGGGGCTATACG 760
|||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 949 TGGCATCCGTTGGATCTTTGAGCCCCTTTGCTCTCTTCGATCCAACGACGGGGCTATACG 1008
Query 761 CTTTCCAGAACGAGGGTAATATCGGAAACAACGTTGGGATATCTGGTTCTTCTACTTCAA 820
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1009 CTTTCCAGAACGACGGTAATATCGGGAACAACGTTGGGATATCTGGTTCTTCTACTTCCA 1068
Query 821 TGGCTGATTCTAGGGTTTATCAGACGCCTCCCGTAAAGATGGAAGAGCAACCTAATTTGG 880
||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1069 TGGTTGATTCTAGGGTTTATCAGACGCCTCCGGTGAAGATGGAAGAACAACCTAATTTGG 1128
Query 881 CTAACTTGTCTAGACCGGTCTCCGGTTTGACGTCTCCTGGGAATCAAACAAATCAGTACT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CTAACTTGTCTAGACCGGTCTCCGGTTTGACGTCTCCTGGGAATCAAACAAATCAGTACT 1188
Query 941 TTTGGCCCGGTTCGGATTTCTCTGGTCCTTCTAATGATCTCCTGTGA 987
||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 1189 TTTGGCCTGGTTCGGATTTCTCGGGTCCTTCTAATGATCTCTTGTGA 1235
> AT3G50410.1 | Symbols: OBP1 | OBF binding protein 1 | chr3:18709748-18710760
FORWARD LENGTH=1013
Length=1013
Score = 132 bits (71), Expect = 8e-30
Identities = 116/138 (84%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 223 TGTCCTCGATGCGACTCCA-GCAACACTAAGTTCTGTTACTACAACAACTATAACCTCAC 281
|||||||| || |||| || |||||||||||||||||||||||||||||| ||| || |
Sbjct 218 TGTCCTCGTTGTGACT-CATCCAACACTAAGTTCTGTTACTACAACAACTACAACTTCTC 276
Query 282 TCAGCCTCGTCACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGCGGCGCCCTGAG 341
||||||||||||||||||||||| ||| ||||| |||||||| || || || | || |
Sbjct 277 TCAGCCTCGTCACTTCTGCAAAGCTTGTCGTCGTTACTGGACTCACGGTGGTACTCTCCG 336
Query 342 AAACGTCCCTGTCGGTGG 359
|||| |||||||||||
Sbjct 337 TGACGTTCCTGTCGGTGG 354
> AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:17525365-17526306 FORWARD LENGTH=942
Length=942
Score = 126 bits (68), Expect = 4e-28
Identities = 115/138 (83%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 223 TGTCCTCGATGCGACTCCAGCAACACTAAGTTCTGTTACTACAACAACTATAACCTCACT 282
|||||||| ||| |||||| || ||| |||||||||||||||||||||||||||||| ||
Sbjct 163 TGTCCTCGCTGCAACTCCACCACCACCAAGTTCTGTTACTACAACAACTATAACCTCGCT 222
Query 283 CAGCCTCG-TCACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGCGGCGCCCTGAG 341
|||||||| | ||| ||||||| |||||| || |||||||| ||||| || | || |
Sbjct 223 CAGCCTCGCT-ACTACTGCAAATCTTGCCGCCGTTACTGGACTCAAGGTGGTACACTCCG 281
Query 342 AAACGTCCCTGTCGGTGG 359
||||||| ||||||||
Sbjct 282 TGACGTCCCCGTCGGTGG 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5