BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910459
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07700.3 | Symbols: | Thioredoxin superfamily protein | chr... 876 0.0
> AT1G07700.3 | Symbols: | Thioredoxin superfamily protein | chr1:2379647-2381362
FORWARD LENGTH=1539
Length=1539
Score = 876 bits (474), Expect = 0.0
Identities = 564/606 (93%), Gaps = 12/606 (2%)
Strand=Plus/Plus
Query 19 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 75
|||| ||||||||||| || |||||||||||||||| ||||||||||||| || | |||
Sbjct 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767
Query 76 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGCT 135
|||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827
Query 136 GAGTCTTCATCCATGAGTATAAACATCGCAATTGGTTGTACGTTTCAGCATGGGAGAGCA 195
||||| | | | |||||||||| | || ||||||||| |||||| ||||| ||||
Sbjct 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878
Query 196 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 255
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938
Query 256 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 315
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998
Query 316 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTAAA 375
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058
Query 376 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118
Query 436 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178
Query 496 CTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAATGGAGTTCTCTTAGAATCA 555
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1179 CTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCA 1238
Query 556 TTTGCAACTAGAGACAAGGAGAGGATCGACACTGCTATTCTCAAATATACATCCTCGGAA 615
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1239 TTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACATCCTCGGAA 1298
Query 616 TCTTGA 621
||||||
Sbjct 1299 TCTTGA 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5