BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910480
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07850.1 | Symbols: | Protein of unknown function (DUF604) ... 1524 0.0
> AT1G07850.1 | Symbols: | Protein of unknown function (DUF604)
| chr1:2426745-2428719 FORWARD LENGTH=1626
Length=1626
Score = 1524 bits (825), Expect = 0.0
Identities = 909/951 (96%), Gaps = 0/951 (0%)
Strand=Plus/Plus
Query 592 AGGTACACGCATCCGGTAGGGGACAGATCGGCAGTGAGGATATCTCGGGTAGTGACAGAG 651
|||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 556 AGGTACACCCATCCAGTAGGGGACAGATCAGCGGTGAGGATATCTCGAGTAGTGACGGAG 615
Query 652 ACGCTACGGCTAGGCAAAAAAGGTGTACGGTGGTTCGTGATGGGAGACGACGACACAGTG 711
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 ACGCTTCGGCTAGGCAAAAAAGGTGTACGGTGGTTCGTGATGGGAGACGACGACACAGTG 675
Query 712 TTTGTGGTGGACAATGTGGTAAACGTCCTTTCAAAGTACGACCACACTCAGTTCTACTAC 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TTTGTGGTGGACAATGTGGTAAACGTCCTTTCAAAGTACGACCACACTCAGTTCTACTAC 735
Query 772 GTTGGTAGCTCCTCTGAGGCTCACGTTCAGAACATCTTCTTCTCATATTCAATGGCATTT 831
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GTTGGTAGCTCCTCGGAGGCTCACGTTCAGAACATCTTCTTCTCATATTCAATGGCATTT 795
Query 832 GGAGGCGGTGGATTTGCCATTAGCTACGCTCTAGCCCTCGAGCTCTCGCGGATGCAGGAC 891
||||||||||| || ||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 796 GGAGGCGGTGGGTTCGCCATCAGCTATGCTCTAGCCCTCGAGCTCTTGCGGATGCAGGAC 855
Query 892 CGTTGCATCCAACGGTATCCTGGTCTCTACGGCAGTGATGATCGCATCCAAGCCTGTATG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 856 CGTTGCATCCAACGGTATCCTGGTCTCTACGGCAGTGATGATCGCATCCAAGCTTGTATG 915
Query 952 ACCGAGCTCGGCGTACCCCTCACCAAAGAACCTGGCTTTCACCAGTATGATGTTTATGGG 1011
|| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 916 ACTGAACTTGGTGTACCCCTCACCAAAGAACCTGGCTTTCACCAGTACGATGTTTATGGG 975
Query 1012 GACTTATTGGGGCTATTAGGTGCACACCCGGTGGCTCCTTTGGTGTCGCTGCACCATATC 1071
|||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 976 GACTTATTGGGGTTATTAGGTGCACACCCAGTGGCTCCCTTGGTGTCGCTGCACCACATC 1035
Query 1072 GACGTGGTGCAGCCGATATTCCCGAAGATGAAGCGCTCACGTGCGCTCCGACACTTGATG 1131
|| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||
Sbjct 1036 GATGTGGTGCAGCCGATATTCCCAAAGATGAAGCGGTCACGTGCACTACGACACTTGATG 1095
Query 1132 TCGTCAGCAGTTCTTGACCCAGCCAGCATATTCCAGCAGTCCATCTGCTACGACCAGAAC 1191
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TCTTCAGCAGTTCTTGACCCAGCCAGCATATTCCAGCAGTCCATCTGCTACGACCAGAAC 1155
Query 1192 CGGTTCTGGTCCATTTCGGTCTCATGGGGATTCGTAGTCCAGATAATCCGAGGCATCATT 1251
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1156 CGGTTCTGGTCCATCTCGGTCTCATGGGGTTTCGTAGTCCAGATAATCCGAGGCATCATA 1215
Query 1252 TCCCCTCGCGAGCTTGAGATGCCTTCAAGAACATTCCTCAACTGGTTCCGCAAAGCCGAC 1311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TCCCCTCGCGAACTTGAGATGCCTTCAAGAACATTCCTCAACTGGTTCCGCAAAGCCGAC 1275
Query 1312 TACATTGGTTACGCGTTTAACACGAGACCAGTATCGAGACATCCGTGCCAAAGACCATTC 1371
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1276 TACATTGGTTACGCGTTTAACACGAGACCAGTGTCGAGGCATCCGTGCCAAAGACCATTT 1335
Query 1372 GTGTTTTACTTAAACTCAGCTAAGTATGATGAAGGACGTCGCCAAGTAATTGGATACTAC 1431
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1336 GTGTTTTACTTAAACTCGGCTAAGTATGATGAAGGACGTCGCCAAGTGATTGGATACTAC 1395
Query 1432 AACTTGGACAAGACAAGGCGGATTCCAGGCTGCCGATGGAGGCTTGATTCGCCTGGCAAG 1491
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||
Sbjct 1396 AACTTGGACAAGACAAGGCGGATTCCCGGGTGCCGATGGAGGCTCGATTCGCCTGGAAAG 1455
Query 1492 ATCGATTCAGTCGTCGTTCTCAAGCGACCTGATCCCCTCCGATGGCACAAG 1542
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ATCGATTCAGTCGTCGTTCTCAAGCGACCTGATCCCCTCCGATGGCACAAG 1506
Score = 815 bits (441), Expect = 0.0
Identities = 523/562 (93%), Gaps = 7/562 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAACAGTTCGAGCTAC-AACACCAATCTGAGCAATCCTAAGAACAGACTTCTAGA 59
||||||||||||||||||| | ||||||||||| ||||| |||||||||| |||||||||
Sbjct 1 ATGGGAAACAGTTCGAGCT-CTAACACCAATCTCAGCAACCCTAAGAACATACTTCTAGA 59
Query 60 AGATCATCACCACCCTAGAAACC-AGCCACCAAACCACAGCAACTCTGCTCGGTCCTCTC 118
|||||||||||||| ||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct 60 AGATCATCACCACCAAAGAAACCAAG-CACAAAACCACAGCAACTCTGCTCGGACCTCTC 118
Query 119 ACCTAAGCTTCTTACGATCTCCTCTGCCATGGCTCTTCATTTTCCTCTTCTTCCTCCCTT 178
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 119 ACCTAAGCTTCTTAAGATCTCCTCTGCCATGGCTCTTCATCTTCCTCTTCTTCCTCCCTT 178
Query 179 TGCTTCTCATCTCTACCACGGGAGGAGGTGGCGGACGCAAGACCTGCCGTCCCTCTTCTT 238
|||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TGCTTCTCATCTCTACAACCGGAGGAGGTGGCTCACGCAAGACCTGCCGTCCCTCTTCTT 238
Query 239 CTACCTATAGCCACCTGTCCCTTGTCGACAAAACAAACTCTTCTTCCTCTGTTGTTTCTG 298
||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||| |||
Sbjct 239 CTACCTACAGCCACCTGTCCCTAGTCGACAAAGCAAACTCATCTTCCTCTGTTG-TTC-- 295
Query 299 AGGAGGAAGAAGACGACAATGTGCCTCCACGCGTCCCCGCTCTTTACCCACAGCGACCAA 358
||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 296 CCGAGGAAGAAGACGACGATGTGCCTCCACGTGTCCCCGCTCTTTACCCGCAGCGACCAA 355
Query 359 GGATGTTCAACACGACGCTTGATCACATCGTTTTTGGGATCGCCGCGTCCTCTGTTCTGT 418
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 356 GGATGTTCAACACGACGCTTGATCACATCGTTTTCGGGATTGCCGCGTCCTCTGTTCTGT 415
Query 419 GGGAGACAAGAAAAGAGTACATCAAATCATGGTGGCGACCTGGTAAGACTCGAGGCGTAG 478
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 416 GGGAGACGAGAAAAGAGTACATCAAATCATGGTGGCGACCTGGTAAAACTCGTGGCGTTG 475
Query 479 TCTGGATTGACAAGAGAGTCCGAACTTACCGAAACGATCCTCTTCCCGAAATCAGAATCT 538
|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 476 TCTGGATTGACAAGAGAGTCAGAACTTACCGAAACGATCCCCTTCCAGAAATCAGAATCT 535
Query 539 CCCAAGACACCTCACGTTTCAG 560
|||||||||||||||| |||||
Sbjct 536 CCCAAGACACCTCACGGTTCAG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5