BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910483
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07880.2 | Symbols: ATMPK13 | Protein kinase superfamily pro... 1718 0.0
> AT1G07880.2 | Symbols: ATMPK13 | Protein kinase superfamily protein
| chr1:2434059-2435745 REVERSE LENGTH=1259
Length=1259
Score = 1718 bits (930), Expect = 0.0
Identities = 1040/1094 (95%), Gaps = 4/1094 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGATGGAAGATGGTGGAATCTTGACATATAATGGTAGATATGTTATGTACAAT 60
|||||||| | ||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 34 ATGGAGAAAAGGGAAGATGGAGGGATCTTGACATATGATGGTAGATATGTTATGTACAAT 93
Query 61 GTACTCGGTAACATTTTCGAGCTATCTTCAAAATACATTCCTCCTATTCAA-CCAGTCGG 119
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||
Sbjct 94 GTACTCGGTAACATTTTCGAGCTATCTTCAAAATACATCCCTCCTATTGAACCCA-TCGG 152
Query 120 TCGAGGTGCCTATGGTATTGTCTGCTGTGCTACAAACTCAGAGACAAATGAAGAGGTTGC 179
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCGAGGTGCTTATGGTATTGTCTGCTGTGCTACAAACTCAGAGACAAATGAAGAGGTTGC 212
Query 180 TATAAAGAAGATAGCAAACGCGTTTGACAACAGAGTTGATGCTAAAAGAACTCTCAGAGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 213 TATAAAGAAGATAGCAAACGCGTTTGACAACAGAGTTGATGCTAAAAGAACTCTCCGAGA 272
Query 240 GATCAAACTCCTTTGCCACATGGATCATGACAACGTTATCAAAATGAAAGATATAATTGA 299
|||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 273 GATCAAGCTCCTTTCCCACATGGATCATGACAATGTTATCAAAATTAAAGATATAATTGA 332
Query 300 GCCACCAGAGAAAGAAAGGTTCGAAGATGTGTATATTGTTTATGAGTTGATGGATACTGA 359
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 333 GCTACCAGAGAAAGAAAGGTTCGAAGATGTATATATTGTTTATGAGTTGATGGATACAGA 392
Query 360 TTTGCACCAGATCATTAGATCCACTCAAACTCTAACCGATGACCACTGTCAGTATTTCCT 419
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 393 TTTGCACCAGATCATTAGATCCACTCAAACTCTAACTGATGACCATTGTCAGTACTTCCT 452
Query 420 TTACCAAATTTTGAGAGGCCTAAAGTACATACACTCTGCAAATGTACTTCACCGCGACCT 479
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 453 TTACCAAATTTTGAGAGGCCTTAAGTACATACACTCTGCAAATGTTCTTCACCGCGATCT 512
Query 480 GAAACCAAGCAACTTGGTTCTGAATACGAATTGTGACCTTAAAATCTGTGATTTTGGGCT 539
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 513 GAAACCGAGCAACTTGGTTCTGAATACGAACTGTGACCTGAAAATCTGTGATTTTGGGCT 572
Query 540 AGCAAGAACTTCGAATGAGACAGAGATAATGACTGAGTATGTTGTGACGAGATGGTACCG 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AGCAAGAACGTCGAATGAGACAGAGATAATGACTGAGTATGTTGTGACGAGATGGTACCG 632
Query 600 TGCACCTGAATTGCTTCTCAACAGCTCTGAATACACAGGAGCAATTGATATTTGGTCTGT 659
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 633 TGCACCTGAATTGCTTCTCAACAGCTCTGAATACACAGGAGCTATTGACATTTGGTCTGT 692
Query 660 TGGTTGTATATTCATGGAGATACTCATAAGAGAGACACTTTTCCCCGGTAAAGATTACGT 719
|||||| || |||||||||||||| | ||||||||| |||||||| ||||||||||||||
Sbjct 693 TGGTTGCATTTTCATGGAGATACTTAGAAGAGAGACGCTTTTCCCTGGTAAAGATTACGT 752
Query 720 TCAACAGCTGAAACTTATCACTGAGCTCTTAGGGTCACCAGATGACTCGGATCTCGACTT 779
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TCAGCAGCTGAAACTTATTACTGAGCTCTTAGGGTCACCAGATGACTCGGATCTCGACTT 812
Query 780 CTTGAGAAGCGATAATGCGCGAAAGTACGTAAAACAACTCCCACATGTTCAAAAACAATC 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTTGAGAAGCGATAATGCGCGGAAGTACGTAAAACAACTCCCACATGTTCAAAAACAATC 872
Query 840 ATTCAGAGAAACGTTTCCAGACATTTCCCCAATGGCTTTAGATCTTGCTGAAAAGATGCT 899
||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 873 ATTCAGAGAAAAGTTTCCAAACATTTCCCCAATGGCTCTAGATCTTGCTGAAAAGATGCT 932
Query 900 GGTTTTCGATCCTTCCAAA-CGCATCACAGTGGAGGAAGCACTGAAGCAGCCGTACTTGG 958
|||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 933 AGTTTTCGATCCTTC-AAAGCGCATCACAGTGGATGAAGCATTGAAGCAGCCGTACTTGG 991
Query 959 CAAGTCTCCATGAGATCAACGAAGAACCAACGTGTCCTTCGCCTTTCAGCTTCGACTTTG 1018
||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||
Sbjct 992 CAAGTCTCCATGAGATCAACGAAGAACCAACATGTCCTACTCCTTTCAGCTTTGACTTTG 1051
Query 1019 AGGAGACAGCCTTGGATGAACAAGACATCAAGGAGCTTGTCTGGAGAGAGTCTTTACACT 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 AGGAGACAGCCTTAGATGAACAAGACATCAAGGAGCTTGTCTGGAGAGAGTCTTTACACT 1111
Query 1079 TCAAGAATAAGTAA 1092
||||||||| ||||
Sbjct 1112 TCAAGAATATGTAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5