BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910527
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08230.2 | Symbols: | Transmembrane amino acid transporter ... 1989 0.0
> AT1G08230.2 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:2583654-2586744 REVERSE LENGTH=1461
Length=1461
Score = 1989 bits (1077), Expect = 0.0
Identities = 1269/1362 (93%), Gaps = 12/1362 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGGGGAAGGGATATCATCAGGAGATATAGAAAAAAGAGGGGAAG-A-T-GTTGAC 57
|||||||| ||| || | |||||||||| ||||||||||||||||| | | |||||
Sbjct 45 ATGGGTGGAGAA--GAGA-GATCAGGAGATGGAGAAAAAAGAGGGGAAGAAGTAGTTGAT 101
Query 58 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACGTGGTGGCACTGCGGATTCCACTTG 117
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 102 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACATGGTGGCACTGCGGATTCCACTTG 161
Query 118 ACGACGTCTATAGTGGCGCCGGCGCTACTGAGTCTACCGTACGCTTTCAAGTTCTTAGGA 177
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 162 ACGACGTCTATAGTGGCGCCTGCGCTACTGAGTCTACCGTACGCCTTCAAGTTCTTAGGA 221
Query 178 TGGGTTGCCGGAATATCCTGTCTGGTGGGAGGAGCAGCCGTCACTTTCTACTCGTACACC 237
|||| |||||| ||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 222 TGGGCTGCCGGGATATCTTGTCTGGTCGGAGGAGCAGCCGTTACTTTCTACTCGTACACT 281
Query 238 CTTCTTTCT-TTAACACTCGAACACCACGCTTCCCTCGGCCACCGTTACCTCCGCTTCCG 296
||||||||| || || ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 282 CTTCTTTCTCTT-ACTCTCGAACACCACGCTTCTCTCGGCAACCGTTACCTCCGCTTCCG 340
Query 297 TGACATGGCTCACCACATCCTCGGTCCGAAATGGGGGAGGTACTACGTTGGACCAATACA 356
|||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 341 TGACATGGCTCATCACATCCTCAGTCCGAAATGGGGAAGGTACTACGTTGGACCAATACA 400
Query 357 AATGGCGGTGTGCTATGGTGTGGTTATTGCGAATGCGCTCTTGGGAGGGCAATGCCTTAA 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 401 AATGGCGGTGTGCTATGGTGTGGTTATTGCCAATGCGCTCTTGGGAGGGCAATGCCTAAA 460
Query 417 GGCAATGTATTTGGTAACGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 476
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GGCAATGTACTTGGTAGTGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 520
Query 477 TTTTGGATGCTTACTCTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TTTTGGATGCTTACTTTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 580
Query 537 CAACTCATTTTCTCTGCTCCTATGCCTGCTCTATAGTGCTTCCGCCGCAGCTGCATCGAT 596
||||||| | ||||| ||||| ||||| ||||| |||||||| ||||| |||||||| ||
Sbjct 581 CAACTCACTGTCTCTCCTCCTCTGCCTCCTCTACAGTGCTTCTGCCGCTGCTGCATCCAT 640
Query 597 CTACATTGGAAAAAG-ATCAAACGCACCAGAGAAGGACTATACTATAGTTGGTGA-CCAA 654
||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| || |
Sbjct 641 CTACATTGG-AAAAGAACCAAATGCACCAGAGAAGGACTATACTATAGTTGGTGATCC-A 698
Query 655 GAAACTAAAGTGTTTGGAATCTTCAATGCTATGGCTATTATTGCCACTACATACGGCAAC 714
||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 699 GAAACTAGAGTGTTTGGAATCTTTAATGCTATGGCTATTATTGCTACTACATACGGCAAT 758
Query 715 GGCATTATACCCGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 774
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GGCATTATACCTGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 818
Query 775 GGGTTGTGTATGTGTTACCTTGTAGTGATAGTGACATATTTCACTGTAGCAATCACCGGA 834
|||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||| |||
Sbjct 819 GGGTTGTGTATGTGTTACCTTGTAGTAATAATGACATTTTTCACAGTAGCCATCACAGGA 878
Query 835 TATTGGGCATTTGGTAACAAAGCCAATGGATTTATATTCACCAATTTCTTAAATACCGAG 894
||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||||
Sbjct 879 TATTGGGCATTCGGTAAAAAAGCCAATGGACTTATCTTCACCAATTTCTTAAATGCCGAG 938
Query 895 ACAGACCATTACTTAGTTCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACCGTTCTT 954
||| |||||||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct 939 ACAAACCATTACTTTGTCCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACTGTCCTT 998
Query 955 CAACTTTCGGCTGTTGCTGTGGTATACCTACAGCCTATAAACGATATTTTGGAAAGTGTA 1014
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 999 CAACTTTCGGCCGTTGCTGTGGTATACCTACAACCTATAAACGATATTTTGGAAAGTGTG 1058
Query 1015 ATCAGCGATCCAACaaaaaaaGAGTTCTCTATCCGCAATGCCATCCCTCGACTAGTTGTG 1074
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1059 ATCAGCGATCCAACAAAGAAAGAATTCTCTATCCGCAATGTCATCCCTCGACTAGTTGTG 1118
Query 1075 CGTTCCCTCTTCGTCGTGGCGGCTACAATCATAGCAGCAATGCTTCCATTTTTTGGAGAT 1134
|||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||
Sbjct 1119 CGTTCCCTCTTCGTCGTGATGGCTACAATCGTTGCGGCAATGCTTCCATTTTTTGGAGAT 1178
Query 1135 GTAAACTCCTTGTTAGGTGCTTTCGGTTTTATACCTCTAGACTTCGTTCTACCTGTAGTG 1194
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1179 GTAAACTCCTTGTTAGGCGCTTTCGGTTTTATACCTCTAGACTTCGTTCTTCCTGTAGTT 1238
Query 1195 TTCTTCAATTTTACCTTCAAGCCATCTaaaaaaaGTTTCATTTTTTGGATCAACACTGTG 1254
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1239 TTCTTCAACTTTACTTTCAAGCCGTCTAAAAAAAGTTTCATTTTTTGGATCAACACTGTG 1298
Query 1255 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGAGTGCTATGGTAGCAGCAGTTAGACAGATT 1314
||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 1299 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGATTGCTATGGTAGCGGCGGTTAGACAGATT 1358
Query 1315 ATAATCGATGCCAATACATATAAGTTGTTTGCGGATGTATAA 1356
||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1359 ATAATAGATGCCAATACGTATAAGTTGTTTGCGGATGTATAA 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5