BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910534
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08300.1 | Symbols: NVL | no vein-like | chr1:2614774-261882... 601 2e-171
AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, ... 571 2e-162
> AT1G08300.1 | Symbols: NVL | no vein-like | chr1:2614774-2618823
FORWARD LENGTH=2241
Length=2241
Score = 601 bits (325), Expect = 2e-171
Identities = 402/440 (91%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 52 AATTCTGTCTCAACTGACTTCAGCATAAGAAATCAGCTTCACACCGGGGCACTTTGGGCT 111
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1678 AATTCCGTCTCAACTGACTTCAGCATAAGAAATCAGCTTCATACCGGCGCACTTTGGGCT 1737
Query 112 GCACAGGCGCAAGAGACAGGTAGAAAAGGTGAAGAAATCGCTTACAGATACTTTGTTGCA 171
||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1738 GCACAGGCGCAAGAGTCCGGTAAAAAAGGTGAAGAAATAGCTTACAGATACTTTGTTGCA 1797
Query 172 AAATACGGTAAGACGGCTCTGGTTAGATGGGTTAATGAGCAGAGCGAAACCGGGTTACCT 231
||||| || |||| ||| ||||||| ||||||||||||||| || |||||||| ||||||
Sbjct 1798 AAATATGGCAAGAAGGCACTGGTTAAATGGGTTAATGAGCATAGTGAAACCGGATTACCT 1857
Query 232 TACGACCTGATAATCGAAAACCGAGGCGGTAAGAAAGAGTACATAGAGGTGAAAGCAACT 291
|||||||| || ||||||||| |||| ||||| ||||||||| |||||||||||||||||
Sbjct 1858 TACGACCTTATCATCGAAAACAGAGGAGGTAACAAAGAGTACGTAGAGGTGAAAGCAACT 1917
Query 292 GTATCCACACGGAAAGACTATTTTAATTTGAC-GATGAGGGAATGGCAATTTGCAAATGA 350
||||||||| ||||||||||||| |||||| | | ||| ||||||| | ||||| |||||
Sbjct 1918 GTATCCACAGGGAAAGACTATTTCAATTTGTCAG-TGAAGGAATGGGAGTTTGCCAATGA 1976
Query 351 GAAAGGAGAGAGTTACTTTATAGCTCACGTTTTGTTAGGCAACAGTAATGCCATCCTCAC 410
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1977 GAAAGGAGAGAGTTACGTTATAGCTCATGTTTTATTAGGCAACAGTAATGCCATCCTCAC 2036
Query 411 ACAACATAGGAACCTTGTCAAATTATGCCAAGACGGTCATCTCCGGTTATTTATTCTCAT 470
|||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2037 ACAACAAAGGAATCTTGTCAAATTACGCCAAGACGGTCATCTCCGGTTATTGATTCTCAT 2096
Query 471 GCCTAACCAGCGAAACGAGG 490
||||| ||||||||||||||
Sbjct 2097 GCCTAGCCAGCGAAACGAGG 2116
> AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase family protein | chr4:7975191-7987620
FORWARD LENGTH=8252
Length=8252
Score = 571 bits (309), Expect = 2e-162
Identities = 425/481 (88%), Gaps = 8/481 (2%)
Strand=Plus/Plus
Query 31 AATCTTGTTCATGAATGGAACAATT-CTGTCTCAACTGACTTCAGC-ATAAGAAATCAGC 88
|||||| ||||||||||||||||| || || || || | |||||| || ||| | ||||
Sbjct 7714 AATCTTCCTCATGAATGGAACAATTCCT-TCACAGCTAATTTCAGCGAT-AGAGACCAGC 7771
Query 89 TTCACACCGGGGCACTTTGGGCTGCACAGGCGCAAGAGACAGGTAGAAAAGGTGAAGAAA 148
|||| || || ||| |||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 7772 TTCATACAGGCACACCTTGGGCTGCACAAGCGCAACAGACCGGTAGAAAAGGTGAAGAAA 7831
Query 149 TCGCTTACAGATACTTTGTTGCAAAATACGGTAA-GACGGCTCTGGTTAGATGGGTTAAT 207
||||||||||||||||||||||||||||||| || || ||| ||||||| |||||||||
Sbjct 7832 TCGCTTACAGATACTTTGTTGCAAAATACGGCAATGA-GGCACTGGTTAAATGGGTTAAC 7890
Query 208 GAGCAGAGCGAAACCGGGTTACCTTACGACCTGATAATCGAAAACCGAGGCGGTAAGAAA 267
|| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 7891 GACCAGAGCGAAACCGGTTTACCTTACGACCTCATGATCGAAAACCGAGGTGGTAAGAAA 7950
Query 268 GAGTACATAGAGGTGAAAGCAACTGTATCCACACGGAAAGACTATTTTAATTTGAC-GAT 326
|||||| | |||||||||||||| ||||| ||||||||||||||||| || ||||| | |
Sbjct 7951 GAGTACGTGGAGGTGAAAGCAACGGTATCGACACGGAAAGACTATTTCAACTTGACAG-T 8009
Query 327 GAGGGAATGGCAATTTGCAAATGAGAAAGGAGAGAGTTACTTTATAGCTCACGTTTTGTT 386
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 8010 GAGGGAATGGCAATTTGCAAATGAGAAAGGAGAGAGTTACATAATAGCTCATGTTTTGTT 8069
Query 387 AGGCAACAGTAATGCCATCCTCACACAACATAGGAACCTTGTCAAATTATGCCAAGACGG 446
||| ||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||| ||
Sbjct 8070 AGGAAACAGTAATGCAATCCTCACACAGCATAGAAACCCGGTCAAGTTATGCCAAGAAGG 8129
Query 447 TCATCTCCGGTTATTTATTCTCATGCCTAACCAGCGAAACGAGGTCAATGTTGCATTTTA 506
||||||||||||||| |||||||||| |||||| ||||||||||||| ||| |||||||
Sbjct 8130 TCATCTCCGGTTATTGGTTCTCATGCCCAACCAGAGAAACGAGGTCAACGTTACATTTTA 8189
Query 507 A 507
|
Sbjct 8190 A 8190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5