BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910535
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08310.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1386 0.0
> AT1G08310.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:2618647-2620452 FORWARD LENGTH=1483
Length=1483
Score = 1386 bits (750), Expect = 0.0
Identities = 885/948 (93%), Gaps = 17/948 (2%)
Strand=Plus/Plus
Query 1 ATGGGGGATTCTTCTGCTAGTTCAAATAGAGTTAAGCTTCGGGATGGGAGATTCTTAGCT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATGGGGGATTCTCCTGCTAGTTCAAATAGAGTTAAGCTTCGGGATGGGAGATTCTTAGCT 472
Query 61 TATAGAGAGAGAGGAGTTCCAAAGGAAAAGGCCAAATACAAGATCATTCTTGTTCATGGC 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TATAAAGAAAGAGGAGTTCCAAAGGAAAAGGCCAAATACAAGATCATTCTTGTTCATGGC 532
Query 121 TTTGGAAGCTCCAAAGATATGAACTTCTCTGCCTC-AAA-------A-GAGCTGATAGAA 171
||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 533 TTTGGAAGCTCCAAAGATATGAACTTCTCTGCCTCAAAATTTTTTCAGGAGCTTATAGAA 592
Query 172 GAACTTAAGGTGTACTTGCTATTCTACGACCGTTCTGGATATGGAGAATCAGATTCAAAC 231
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 593 GAACTTGAGGTGTACTTGCTATTCTACGACCGTTCTGGATATGGAGCATCAGATTCAAAC 652
Query 232 ATGAAACGTTCGTTGGAAAGCGAAGTTGATGACATAGTAGACCTTGCAGATCATCTGCAG 291
| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||| ||
Sbjct 653 ACAAAACGTTCGTTGGAAAGCGAAGTTGAAGACATAGCAGAACTTGCAGATCAGCTGGAG 712
Query 292 TTAGGACCTAAGTTTTATCTAATTGGAATTTCCATGGGATCTTACCCTACTTGGGGTTGC 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTAGGACCTAAGTTTTATCTAATTGGAATTTCCATGGGATCTTACCCTACTTGGGGTTGC 772
Query 352 CTAAAACATATACCGT-ACAGGCTATCCGGCGTGGCTTTTGTTGCTCCGGTGGTTAATTA 410
|||| ||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 773 CTAAGACACATACC-TCACAGGTTATCCGGCGTGGCTTTTGTTGCTCCGGTGGTTAATTA 831
Query 411 TCGGTGGCCCTCGCTTCCTAAGAAGCTAATCAAAAAAGATTATAGGAGAGGTATTATCAA 470
||| ||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 832 TCGATGGCCTTCACTTCCGAAGAAGCTAATCAAAAAAGATTATAGGACAGGTATTATCAA 891
Query 471 ATGGGGTTTGAGGATATCCAAATATGCACCTGGACTGTTACATTGGTGGGTAATTCAAAA 530
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 892 ATGGGGTTTGAGGATATCAAAATATGCACCTGGACTGTTACATTGGTGGATCATTCAAAA 951
Query 531 GCTTTTCCCTTCAACTAGTTCAGTCCTTGAAAGCAATCCGGTCTACTTCAACAGCCACGA 590
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 952 GCTCTTCGCTTCAACTAGTTCGGTCCTTGAAAGCAATCCGGTCTACTTCAACAGCCACGA 1011
Query 591 CATAGAAGTGCTCAAGCGAACAACCGGATTTCCCATGCTTACTAAGGATTCGCTACTGGA 650
|||||||||||||||||||| ||| || |||||||||||||||||||| ||||| |||
Sbjct 1012 CATAGAAGTGCTCAAGCGAAAAACTGGTTTTCCCATGCTTACTAAGGAAAAGCTACGGGA 1071
Query 651 AAGAAATGTTTTCGATACTCTAAGGGACGATATCATGGCTTGTTTCGGGAAATGGGACTT 710
||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||
Sbjct 1072 AAGAAATGTTTTCGATACTCTAAGGGACGATTTTATGGTTTGTTTCGGGCAATGGGACTT 1131
Query 711 CGAACCCGCAGACCTAAGCATTAGTA-AAGAGAGCTATATTCACATCTGGCATGGTAAGG 769
||||||||| || |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 1132 CGAACCCGCGGATCTAAGCATCAGTACAA-AGAGCTATATTCACATCTGGCATGGTAAGG 1190
Query 770 AAGACAAAGTTGTTCCATTTCAACTTCAAAGATGCATTCTGCAGAAACAACCTTTGATTA 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1191 AAGACAAAGTTGTTCCATTTCAACTTCAAAGATGCATTCTGCAGAAACAACCTTTGATCA 1250
Query 830 ACTACCACGAAATCCCGCAAGGCGGACATCTGATCGTACACTATGATGGCATTTGCGATG 889
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1251 ACTACCACGAAATCCCCCAAGGCGGACATCTGATCGTACACTACGATGGCATTTGCGATA 1310
Query 890 CGATAT-TACGCT-CACTATTGCTCGAGGAAGAACAACAAAAGCTGTA 935
|||| | |||| | ||||||||||| ||||||||||||||||||||||
Sbjct 1311 CGAT-TCTACG-TGCACTATTGCTCAAGGAAGAACAACAAAAGCTGTA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5